Osag015437.1
Basic Information
- Insect
- Onthophagus sagittarius
- Gene Symbol
- -
- Assembly
- GCA_036711965.1
- Location
- JASERS010000003.1:33470858-33481784[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0013 0.16 13.9 2.8 2 23 59 80 58 80 0.94 2 19 0.15 19 7.4 2.6 1 23 190 213 190 213 0.96 3 19 0.04 4.9 9.3 0.7 1 19 218 236 218 240 0.90 4 19 6.2e-05 0.0077 18.1 1.0 1 23 246 269 246 269 0.96 5 19 7.6e-05 0.0094 17.8 2.6 1 23 280 302 280 302 0.99 6 19 0.0028 0.35 12.9 0.8 3 23 309 329 308 329 0.98 7 19 0.039 4.8 9.3 3.1 1 23 335 357 335 357 0.97 8 19 1.8e-07 2.3e-05 26.0 3.5 1 23 363 385 363 385 0.98 9 19 0.2 25 7.0 0.1 2 23 481 502 480 502 0.95 10 19 0.03 3.7 9.6 1.8 1 23 522 545 522 545 0.93 11 19 0.018 2.2 10.4 4.3 1 23 550 573 550 573 0.90 12 19 1.1 1.4e+02 4.7 0.6 1 23 580 602 580 602 0.90 13 19 6.6e-05 0.0081 18.0 0.2 1 23 608 630 608 630 0.97 14 19 0.014 1.7 10.7 3.5 1 23 636 659 636 659 0.96 15 19 1.8e-05 0.0022 19.8 1.2 2 23 669 690 669 690 0.97 16 19 0.00033 0.041 15.8 1.3 3 23 698 718 697 718 0.98 17 19 9e-05 0.011 17.6 2.4 1 23 724 746 724 746 0.98 18 19 6.4e-06 0.00079 21.2 0.6 1 23 752 774 752 774 0.98 19 19 0.0082 1 11.4 0.0 1 21 780 800 780 801 0.96
Sequence Information
- Coding Sequence
- ATGTGTTCAGAAAACTCAGGTAGgATTACGAAGAGTGAACCATCGGTTTCATTCGGGGATATTACTCCAAATCTATATGGTTTATTGGAGCAAGACCTTAATACTGATAATTCCATCAAAGCATCTAGGTCAAGTGACCCGTTAGAACAGCTAACTGATTTGATGGAAGTGTGTAAATGTAATGACTGTGGGAAAGTGTTTATGAATGTTTATCAATATAAATTACACAGTCAATTGCATAAACATACTATGCAAAGTGACAATTCTAACGTACAAGTTAATGATGAAGATACTGAAAAATGTTGCGATCCTCCCTTAGAGAATATCGAAATTATTTGTAACGATATTGCATTTGATAAATGTGATAATGCACAAGATACTGCTACAAAACTTGACTCAACAGATCAATCTAAACCTGACGTAATTGAAATAGTtgattctgatgatgaagaTTGTGTTGTTGTTAATCCacccaaaaaaagaaaaaaatgtgtaaaatgtaaaagatTAGTTGTATCGgACATTGATTACGTGTTACATTGTCGAAGACATTGTCCGGACAATAAGTTTAAATGCGTTTACTGTGATTATAAAACATCCGATCTGAACGATATATCACAACATTTACACAGTTTTCACGACAATTTTAGGTATACCTGTAAAATATGCAATAAAGGTTTTGATGTTTTAACGTGGTTTGAGGAACACGATAATTTTCATACGGGTAAAAAACCGTTCACATGCGAGTTTTGCGgcaaatcatttatttattcaagGTATTTGGCAGCGCATAAAAGTAGTATGCACAAATTAGAAATTACTGGTGTGGCTAGCACCTACGAATGTCCTTTGTGCAGCAAACAATACCAACATAAAAACAGTTTAAAAGTACACATGAATTCTCATACTGGAAACGTAGCGATATGCGATATATGTGGAAAACAATTATCTAGTAcagaaaaattaaagtttcaCATGAGAACACACACCGGGTATAAACCGTTTAAATGTAGATTTTGTGAgaaatgttttacaaaaaaaccTATATTGGTAGAACACGAACGAATTCACACTGGCGAGAAGCCGTATAATTGTAGTTATTGCCATAAATCGTTTTCGCAACGCTCGAGTTTGGTGATTCATATTCGGACTCATACAGGTGAACGACCGGCTTTTGATCCATTCCTTATTATATCGGAAGGCCAAAAAAGTAAGAAGACGATTTGGAATAAGAAATTACCTGAAATCGATATAATCCCCATCAAAAAAGATTCATTTGGCAAAATTAATCATTTGGATGAACACACAGACGATGTTGCTTCTTGCGATGCGAAAATATTAAGACATCCCTTATACAAGAATCCGTTTgtttataagaaaaattgttgGAGATTGGGGCGAAGGAAAAGTCAACATTTTGAGCACACCAATCCAAAATGGTCGTGTATGATTTGCAATTTTGTAGCTAAAGAAAAAAACTCCTTAATCAATCACTACGAAGTTCATAAAGCAGAAAAAGACGCAAAATTAGAGTTACCTGAATGTAAATCTAAATCGGACTATTTCAATTGCTCAATATGTTATCAGGAATTTACGTCGTTAAAAGCGTACGAAAAACATTTTGATCGATATCACGGGGAAAGAAAATTTACTTGTTTTATATGCGAAAAGTTTTATAAAGATGCCTATCAACTTTGTGTTCATAACCATTTAGTGCACACAACAACCGAAAATCAATATAATTGCATTTTATGCGATTTTAAAGCAATTTCTAGGAAATCCTTGAAACAACACCTACAAGGACACGAAGATTCTTGTCTTTTTAAATGCGATGTTTGCGGAAGAGGCTTCGAAGGAAAATCAAGTTTAGAGGAGCATAAAACAATACACGACGCGTCAACAATATTTTGTTGCGACATTTGCGgcgaaaattttgattcatcaCTTCATCTTGATgatcacaaaaaatcaaaacatccAGAGATAGAAAATGCATTAGGCAACGAATGTCATTTATGTGGCAAGAATTTCGCGAATAAAAAAAGCTTAATTCTACACATTAAAGGGCACACTGGCGAAAGTTCAGTTTTGTGCGATATGTGCGGAAAGAGATTGTCAAGCGGTgaacatttaaaacaacatttacGGGTACACACCGGTTATAAACCTCACACTTGTGCTGTTTGTGGTAAAGGATTTGCAAAGAAATGCAACTTAACTCTGCATGAAAGGGTTCATAGTGGAGAAAAACCTTACGTTTGTAAAGTTTGTTCGAAAGCGTTTAGCCAAAGATCAACGTTGGTTATTCATGAACGATATCATTCAGGAGAACGTCCATATGTTTGTAGTCTTTGTAGTAAAGGATTTGTTGCTAAAGGGTTACTTAGCGTTCATATAAAAAATTGCAATGTGATTCCTGCGGAATATTTAAGTGGTATTACAGATTAA
- Protein Sequence
- MCSENSGRITKSEPSVSFGDITPNLYGLLEQDLNTDNSIKASRSSDPLEQLTDLMEVCKCNDCGKVFMNVYQYKLHSQLHKHTMQSDNSNVQVNDEDTEKCCDPPLENIEIICNDIAFDKCDNAQDTATKLDSTDQSKPDVIEIVDSDDEDCVVVNPPKKRKKCVKCKRLVVSDIDYVLHCRRHCPDNKFKCVYCDYKTSDLNDISQHLHSFHDNFRYTCKICNKGFDVLTWFEEHDNFHTGKKPFTCEFCGKSFIYSRYLAAHKSSMHKLEITGVASTYECPLCSKQYQHKNSLKVHMNSHTGNVAICDICGKQLSSTEKLKFHMRTHTGYKPFKCRFCEKCFTKKPILVEHERIHTGEKPYNCSYCHKSFSQRSSLVIHIRTHTGERPAFDPFLIISEGQKSKKTIWNKKLPEIDIIPIKKDSFGKINHLDEHTDDVASCDAKILRHPLYKNPFVYKKNCWRLGRRKSQHFEHTNPKWSCMICNFVAKEKNSLINHYEVHKAEKDAKLELPECKSKSDYFNCSICYQEFTSLKAYEKHFDRYHGERKFTCFICEKFYKDAYQLCVHNHLVHTTTENQYNCILCDFKAISRKSLKQHLQGHEDSCLFKCDVCGRGFEGKSSLEEHKTIHDASTIFCCDICGENFDSSLHLDDHKKSKHPEIENALGNECHLCGKNFANKKSLILHIKGHTGESSVLCDMCGKRLSSGEHLKQHLRVHTGYKPHTCAVCGKGFAKKCNLTLHERVHSGEKPYVCKVCSKAFSQRSTLVIHERYHSGERPYVCSLCSKGFVAKGLLSVHIKNCNVIPAEYLSGITD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -