Osag004653.1
Basic Information
- Insect
- Onthophagus sagittarius
- Gene Symbol
- -
- Assembly
- GCA_036711965.1
- Location
- JASERS010000001.1:70114016-70116263[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.6e-05 0.002 19.9 2.5 1 23 246 268 246 268 0.97 2 15 0.0049 0.61 12.1 2.1 2 23 274 295 273 295 0.97 3 15 0.64 80 5.4 4.1 2 23 302 323 301 323 0.87 4 15 0.017 2.1 10.4 0.0 2 23 335 357 334 357 0.94 5 15 0.0023 0.28 13.2 0.9 3 23 364 384 362 384 0.95 6 15 6.1e-05 0.0076 18.1 0.9 2 23 391 412 390 412 0.96 7 15 5.2e-07 6.5e-05 24.6 4.1 1 23 418 440 418 440 0.99 8 15 3.4e-05 0.0042 18.9 0.4 1 23 446 469 446 469 0.96 9 15 3.5e-06 0.00044 22.0 1.4 1 23 475 497 475 497 0.97 10 15 0.019 2.3 10.3 0.2 2 20 512 530 511 531 0.94 11 15 7e-07 8.7e-05 24.2 0.3 1 23 539 561 539 561 0.99 12 15 1.8e-05 0.0022 19.8 1.2 1 23 567 589 567 589 0.97 13 15 3.3e-06 0.00041 22.1 0.6 1 23 595 617 595 617 0.98 14 15 4.7e-07 5.8e-05 24.7 1.0 1 23 623 645 623 645 0.99 15 15 0.64 80 5.4 0.3 5 21 654 670 651 671 0.91
Sequence Information
- Coding Sequence
- ATGGCAATGGTTGGAAAAGAAGAACCCATATCCATCGTTAAATTGGTCGATTATACGATATCGATTTGTCGAGTATGTTCGTTAAGTACTGaatgtcaaaatatattttCCATGAAATATTGCGATCTTACATTCgccgatttattttattattccaCGAGAATTGAGCTTTCTCCAGAGGATAATCCGTATCATGTATGTTTAATGTGCGTTGGAAAACTATTAAACGCTTACGAATTTATTATTCAATGTGAAAAAGCTTGGTATGCTCAAAAACAAACAAGATTAAGCGCGCAATTAGCTGCAAGCAAACAATTCAAAGCAATTGCGCCAAAACCATTAACAGATGTTACAGTTTATGTTGAtgttccaaaagattttgttGAAAATGCAGGAAACCATCAAGAAGTGATTGTTTTTACTGATGATGATGGAATTATAAAAGGAGATCAAATTTTTAGTGTTATTGAAGAAGAATCTGCAAATAGTACAAAAAGTTCAAATTCAGATGTTAAAAGTTTACCTGTTAAAAAACAAACATTGATTAAAATCCTTGCACAACAAGAGGAAGACTTAAAGCAAGAAAATGATGACAAagatgatatttttgaaaatattttacaggaATTAAATGAAGCTGaagcaaattcaaatttaaacgaAAATGAGAAAGATGATGAAGCTGAAATTGAAAGCAACACCGAAATTGGAGAAGAATTAAACATCAAACCTCCGTATAAATGTGTGAAATGCGATAAAGTTTTTAGgcaaattcattatttaaataaacatatCTTGGatcatcttaattttaaaaaaagttgcaATATTTGTAACAAAGagtttttaaatcaaaaagcaCTTTCTGTACACTTACACACGCACAGATCAAATCGACAAATGGTGTGCGAACATTGTGGAAAAACCATCTCAAGACACTCATTTAAAAGCCACTTTGAAAGGTATCATTCTGAAGAAGCAAGAGATTTCTCAGAAAAGAAGTCTTGTAGGATTTGTTCAATCCCTGTCACGACACCTCAAGAATTAGCAGCTCATATGCAAGCTTTTCACTCACAGAATGATCATTTATGTAATATTTGTGGGAAAACTTTCTTAGGTCTTGCCAGGTTAAAAAAGCATATGTTAATTCATGATGAACGACGTCGCGTTTCTTGTACGATTTGTAATAAGCTATTTAGCTCGCGAGAAAGTTTAAAACAACATGTTTACACTCACACGGGAGTTAAACCTTATCAATGTCATGTATGTGGGAAACGTTGTACTCAAAGCCAACAATTAAAAGCTCATATTCGCGTACATACCGGGGATAAACCTTATACATGTGAGTTTTGTGATAATTCATTCACAACATCAGCCGCTTTAAAAATACACGTTCGTGGTCGTCATTTTAATGATAAACCACATGTTTGTGAGGTTTGTGGGAAATGCTTTATTCAAAGAGGTCCGCTCGAGAGGCATTTAAGATTGCACACAATGGGGAGAAGAAGTAGCCATCACAACCCAAATTCTTGGCCGTGTAGTTtatgtaatatcatttttgaaactcGAAGAGAACTTTTAGCACATCAATGTCCCAACATTCATTTAGCGCCCTATGAATGCAGCGAATGTGGTAAAAGATTCCGTATTAAACCACTTTTAACAGTTCATATGAGAATACATACGGGAGAAACCCCGTTTAAGTGTCAATATTGTCCAAAAGCTTTTCGATCTAAACCAGGGTTAAAAGAACACACTTTTATGCACACAGgtgaaaaaagatttatttgtGATATTTGTGGGAAGGGTTGTGTGCAAAGACAACAGCTTATATCGCATATGAGAATTCATACAGGGGTTAGACCATATAAATGCTATATTTGTGGTAGTACCTTCACTCTTAAAGGAAATTTAACGGTGCATATGAGGACGCATACTGGGGAAACCCCGTATAAATGCGAGTGTGGGGCGAGTTATTGCGCATCGAACGCTTTGAAAAGGCATCAAGCGAGATGTAACCTGTTTATTTATGAGGAAACTGTTAACGAATGTGAGGTGTATACTGAGaatattgattttgataacgaaagtgtgtcaaattaa
- Protein Sequence
- MAMVGKEEPISIVKLVDYTISICRVCSLSTECQNIFSMKYCDLTFADLFYYSTRIELSPEDNPYHVCLMCVGKLLNAYEFIIQCEKAWYAQKQTRLSAQLAASKQFKAIAPKPLTDVTVYVDVPKDFVENAGNHQEVIVFTDDDGIIKGDQIFSVIEEESANSTKSSNSDVKSLPVKKQTLIKILAQQEEDLKQENDDKDDIFENILQELNEAEANSNLNENEKDDEAEIESNTEIGEELNIKPPYKCVKCDKVFRQIHYLNKHILDHLNFKKSCNICNKEFLNQKALSVHLHTHRSNRQMVCEHCGKTISRHSFKSHFERYHSEEARDFSEKKSCRICSIPVTTPQELAAHMQAFHSQNDHLCNICGKTFLGLARLKKHMLIHDERRRVSCTICNKLFSSRESLKQHVYTHTGVKPYQCHVCGKRCTQSQQLKAHIRVHTGDKPYTCEFCDNSFTTSAALKIHVRGRHFNDKPHVCEVCGKCFIQRGPLERHLRLHTMGRRSSHHNPNSWPCSLCNIIFETRRELLAHQCPNIHLAPYECSECGKRFRIKPLLTVHMRIHTGETPFKCQYCPKAFRSKPGLKEHTFMHTGEKRFICDICGKGCVQRQQLISHMRIHTGVRPYKCYICGSTFTLKGNLTVHMRTHTGETPYKCECGASYCASNALKRHQARCNLFIYEETVNECEVYTENIDFDNESVSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01098675;
- 90% Identity
- iTF_01098675;
- 80% Identity
- -