Osag015430.2
Basic Information
- Insect
- Onthophagus sagittarius
- Gene Symbol
- PRDM5
- Assembly
- GCA_036711965.1
- Location
- JASERS010000003.1:33422320-33428643[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.011 1.3 11.0 1.4 3 23 46 66 44 66 0.93 2 20 0.00012 0.015 17.2 1.0 3 23 73 93 71 93 0.97 3 20 0.0028 0.34 12.9 0.3 2 23 100 122 99 122 0.93 4 20 0.00015 0.018 16.9 0.6 1 23 128 151 128 151 0.98 5 20 0.11 13 7.9 3.9 1 23 156 178 156 178 0.98 6 20 0.00067 0.083 14.8 2.0 1 23 187 209 187 209 0.97 7 20 1.9e-05 0.0024 19.7 0.4 1 23 215 237 215 237 0.98 8 20 0.0017 0.22 13.5 1.1 1 23 243 265 243 265 0.97 9 20 2.1e-06 0.00026 22.7 0.9 1 23 271 293 271 293 0.98 10 20 0.049 6.1 9.0 0.4 3 17 301 315 299 316 0.88 11 20 0.0018 0.22 13.5 3.6 2 23 324 345 323 345 0.93 12 20 0.00012 0.015 17.2 1.0 3 23 352 372 350 372 0.97 13 20 0.0013 0.16 14.0 0.4 2 23 379 401 378 401 0.93 14 20 0.042 5.3 9.2 0.8 1 23 407 430 407 430 0.96 15 20 0.015 1.9 10.5 1.2 1 23 435 457 435 457 0.98 16 20 0.0021 0.26 13.2 1.7 1 23 466 488 466 488 0.97 17 20 1.5e-05 0.0018 20.0 0.2 1 23 494 516 494 516 0.98 18 20 0.0014 0.17 13.8 0.9 1 23 522 544 522 544 0.97 19 20 2.2e-05 0.0027 19.5 3.4 1 23 550 572 550 572 0.98 20 20 5.7e-05 0.0071 18.2 2.2 3 23 580 600 578 600 0.97
Sequence Information
- Coding Sequence
- ATGGTTAACAGCAAAGTGCTTAACTATTACAAAAAACGTAAAGGATTGAGAGGGTTAGGGGTCCTTGTTTGCAGGCATATCCAAAGATTCTACCTGATTCAatgcacaaaattcaaattatctgAAGGTATAGCATGCCCTATATGCAACAAAGTATtgataaataaactaaaattaagaaaacattgCCGTCAACATAAACCAAAATCATTTGGCTGTGAACTATGCGATAAAAGTTACAAAACAAATTACGAATTGCAATACCACAAAGAAAGACATTTGAAGAAAAAAACGATTCCTTGTGAGGTTTGTGGACTAATGCTTTCTTCAGATAAAAATCTAAAACAACATATGATTGCTTGTCATCTCAAAGAACATCCGTTTAAATGCGATCAATGCGATAAAGGATATTTCTCAGAAGCCGCTTTAAATACTCATAAAAGAAGGGCCCACGATGGAGTTGTTTATAAATGCGAGCACTgcgaaaaaatttattactggcTATATGATTATAAATATCACTTAAAATCACATGAAACGGGTTATACAAAGCCTGAACACGTCTGTATGATATGTTCTAAAGTAATGGGAACGAAAAGGAGTTTGCAACGTCATTTGCGTACACATCAATCGACAAAACATTATATGTGCGAACTTTGTGGAAAAGGAGTTACGTCGTTATCGTCATTGAAAACTCACGAACGTCGTCATAGAGGAGAGAAACCTTTCGCTTGTAgatattgtcaaaaaaattttacatcaGCCGTTTTACGTCGACAACACGAACGTATTCACACAAATGAAAAGCCTTACGTTTGCCAGACATGTAATAAAGCTTTTAATCAGTCTTCATCTTATAAAGTCCACGTGAGAATTCATACAGGTGAAAGACCATATGGTTGTCATATTTGCGAGAAACGATTTTCATCTCGAACAGCatacACAAACTTCAAACTATCTGAAGGTATAACATGCCCTGTATGCTACAAAGTATTCAcaaataaactaaaattgaGAAAACATTGTCGTCAACATAAACCAAAATCATTTGGCTGTGAACTATGCGATAAAAGTTACAAAACAAATTACGAATTGCAATACCATAAAGAAAGACACTTGAAGAAAAAAACAATTCCTTGTGGGGTTTGTGGACAAATGCTCTCTTCAgataaaaatctaaaaaaacatATGATTGCGTGTCATCTGAAAGAACATCCGTTTAAATGCGACCAATGCGATAAAGGCTATTTATCAGAATTCGCTTTAAGTAGTCATAAAAAGAGGGCTCACGATGGAGTTGTTTATAAATGCGAGTACTGCGAAAAAATTTACTACTGGCAAGCGGCTTATAAATATCATTTGAAATCACACGAAGCGGGATATGTAAAGCCTGAACACGTCTGTATGATATGTTCTAAAATAATGGGATCGAAAACGAGTTTGCAACGTCATTTGCGTACTCATCAATCGACAAAGCATTATATGTGTGAAGTTTGTGGAAAAGGAGTTACGTCGTTGTCGTCATTGAAAATTCATGAACGTCGTCATAGAGGAGAGAAACCTTTTGCTTGTAGATATTGTCAAAAAGAATTTACATCATCCGTATTACGTCGAGTTCATGAACGTATTCATACCAATGAAAAGCCTTACGTTTGCCAAACATGTAATAAAGCTTTTAATCAGCATTCATCTTATAAAGTCCACACGAGAATTCATACAGGTGAAAGACCATATGGTTGTCATCTTTGCGAGAAACGATTTTCATCTCGAACAGCGTTGAATACACATCTAAAAATACATTGA
- Protein Sequence
- MVNSKVLNYYKKRKGLRGLGVLVCRHIQRFYLIQCTKFKLSEGIACPICNKVLINKLKLRKHCRQHKPKSFGCELCDKSYKTNYELQYHKERHLKKKTIPCEVCGLMLSSDKNLKQHMIACHLKEHPFKCDQCDKGYFSEAALNTHKRRAHDGVVYKCEHCEKIYYWLYDYKYHLKSHETGYTKPEHVCMICSKVMGTKRSLQRHLRTHQSTKHYMCELCGKGVTSLSSLKTHERRHRGEKPFACRYCQKNFTSAVLRRQHERIHTNEKPYVCQTCNKAFNQSSSYKVHVRIHTGERPYGCHICEKRFSSRTAYTNFKLSEGITCPVCYKVFTNKLKLRKHCRQHKPKSFGCELCDKSYKTNYELQYHKERHLKKKTIPCGVCGQMLSSDKNLKKHMIACHLKEHPFKCDQCDKGYLSEFALSSHKKRAHDGVVYKCEYCEKIYYWQAAYKYHLKSHEAGYVKPEHVCMICSKIMGSKTSLQRHLRTHQSTKHYMCEVCGKGVTSLSSLKIHERRHRGEKPFACRYCQKEFTSSVLRRVHERIHTNEKPYVCQTCNKAFNQHSSYKVHTRIHTGERPYGCHLCEKRFSSRTALNTHLKIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -