Basic Information

Gene Symbol
stc
Assembly
GCA_963969525.1
Location
OZ018388.1:14642344-14650842[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.8 9.8e+04 -4.0 2.9 15 19 226 230 225 230 0.87
2 16 2 1.1e+05 -4.5 1.6 15 19 645 649 644 649 0.81
3 16 0.08 4.3e+03 0.4 0.2 4 10 678 684 677 689 0.95
4 16 6.4e-06 0.34 13.4 12.3 4 18 693 707 690 708 0.93
5 16 1.7 9.1e+04 -3.9 1.3 5 10 733 738 733 738 0.90
6 16 1e-06 0.055 16.0 12.6 1 19 744 762 744 762 0.97
7 16 0.38 2.1e+04 -1.8 1.3 8 13 767 772 766 773 0.81
8 16 1.1e-08 0.00058 22.3 14.1 1 19 802 820 802 820 0.97
9 16 1.7e-05 0.9 12.1 13.6 4 19 867 882 860 882 0.87
10 16 1.5 7.8e+04 -3.7 2.2 5 10 911 916 911 916 0.93
11 16 2 1.1e+05 -4.6 11.2 1 11 922 932 922 943 0.93
12 16 8.5e-10 4.6e-05 25.8 11.2 1 19 949 967 949 967 0.98
13 16 2 1.1e+05 -4.6 1.3 6 10 996 1000 995 1000 0.76
14 16 0.00036 20 7.8 8.4 10 19 1014 1023 1012 1023 0.93
15 16 2.5e-08 0.0014 21.1 17.7 1 19 1059 1078 1059 1082 0.95
16 16 0.87 4.7e+04 -3.0 19.2 4 19 1090 1107 1088 1107 0.93

Sequence Information

Coding Sequence
ATGGACGTGTTAGAAATGAACTTTGGAGAGATCTGCAGGACATGTTTAAAGAAGCCCACAGATTTCAAGAACATCAATGAACCTGCATCAAATGCTATCACCCTGGCAGAAATGATCAAGTATTGTACTTCAATAACGGTTGATGATGGTGATCTTCTTCCTACAAATCTATGCATTGATTGTGTAAAGGATGTGGAAACAGCTTACAAGTTCAAAACCAAAACTGAAAAAGTGAACACGACTTTAAGGGAATATCTACAAGCGCAAATAGAAAGCTTCCAGCAAACTTTAGTAAAACCCAGTGAAGAAGTTCAGGTAAAACTTGAACCAACAGAGGAAAGTATGGAGAACATAGAACACACATTTCTCTACCCAGAAGTCATGATGGAGAGTACACCCAACGAGCCCGAAGCTGAAATGTCGAATACCGACATGGATGGCTCTGAAAATTTCGAGGACGAAACTGAATGCATGGAGGAACTGGAAAAGTTTTCAAACGATTTTATCGAGTATAGAGTCAGACTGaatgatggtgatgatgatgatgatgatggtgatgatgatAATGGCCCAATAGAAATGCTTCCATCGGAGGTGGTGGAGAAAGCACTGattaaacaaaagaataaaagaCCCAAGAAATCATTGAATTTAAACAGGAAGAAGAATTTTTCATGTCCAGTTTGTCCTAAGCGGTACAGGGACAGGAATAGCTGCATAGAACATTACAGGATTCATACAGGGGAGCGACCGTATGAATGTAATCTGTGTGtcTTTTACTCGGAGGAAGCTCTCAGGCAACATCAGAGTTTCGGTTGTGAAACTGCACCTGATGCGGTCCCTATGAATGAAGCCCCGAAGTCCATTCGCAGTGCGAACAACGCCAACATATTTCCGATCGAAAAACCGTTAATTCCGGCTGTTTCAGGGCCAGAACGCGAGTGCATGTCCCACTGGGACCCCAACTACGGTGCCCCCTCGAGGGGGTACCCCGACGCCGCCCACTCGAGCACGTACGTGAATTCGTCGTACGGCCAGAGCCAGGGTAACGTTTACACGGTTGCACAAATTGAGGCCCAATACCAAAACAGGAACAACAATCACAACGCGACTGTGGGTGAAGACAATTACAGGAGGAACGCAAGTAATCAAAATCATTTCGATGTCAGCACTTCGAATCTCCAGCCAACGGCAGTCGAATTTCGACCCGGCACCTCGTATTCGGGGAGTTCTGGAAGCAACGGTGCAGTAAGGAAGAATTATAACTCGGATAGAAGACGGGGAAAGGCACGGGGACAAGAtTCATCAAGATTTAAATCGAATGGAGAACGTACTATTGACAGTAGAAAGGAACAAAACCAGGCGATTAAGGAAACGATGGATATCTTGAATAAAATGAAGATGAGCACGACGGATCGAGAGTCCTCCACAGATAGCCGTAGCACAGGAGGCAACAGGCCGCCGAATACTTTTGAGCGGAGCGATTTGAAAAACCCCAGgtataataataacagaaacGATGGTGAGAAGGGAAAGCAATCAGGGTACAGGGGGAACAATAATAACGGGCATCAAAATAATCAGCGTGAAGAATATTATGGTAGGAAGTGGAATAACAACGAGAGGAGATCTGACAACTGGAGATATAATCGTAAGGAGAGGAAGGAACCTGTTGAAGAGGTGAAGCCGGTCGCAGAGAGGAGCGAGAAGTATAAGAGCCGGCCACAGcaacttaaacaaaaattggatgCCGGATCGCAACGTGAACGTCTTGAACAAATGGTGCAGCTGCGTATGTTGGAATGCCTGGTCTGCTGCGAGCGTTTGCGCCACACCGACAAAGTCTGGTCCTGCAAGCAGTGCTACAACATCATCCACCTTTCGTGCGTCGTGAAATGGGCCGTGTCTTCGAAACTGGAACAGGGCTGGCGGTGTCCGGCATGCCAGAACGTCTACCACGAGGTCCCCACCGAGTATCGGTGTTACTGTGACAAGTACCCCGATCCGAAGCTCGAACCTGGAAACCTCCCGCACAGTTGCGGGGAGGTTTGCGGTAGGAAGGGTAGGTCTTGCGACCATTCCTGCACGCTGCTGTGTCACCCCGGCCCGTGCCCGGATTGTAACATAATGGTGGCGCGCGCGTGCGGATGCGGCTCGACTAAGCCGATGGTCAAGTGCAGTTCCGACATTCAGATCACTTGCCAGAATTCGTGCAGCAAGGTCCTGAATTGTGGCGTGCACGCCTGTGAGGCCCAGTGCCACACCGGCCCGTGCACAGACTGCAAGATGTCAATTTCTCAGGTTTGCCACTGTGGCAAGGAGGAGAGGAGTGTGCTGTGTAAAGAGGATACTCAGGGAATTGAGAGTTACGAGTGCGGTGGCGTCTGCGGTAGGACGCTTAGCTGCGGGAACCACACTTGTAATAAACTGTGCCACCCCGGTTCCTGTGATGGCTGCAGTTCGGATCCCGACAGCATTAAGACGTGCCCGTGTGGACAGACAAAATTATTGGAGGAACGTACTTCGTGCCTTGATCCAATTCCATGCTGTGATAAGgtttgcaacaaaaaattaaagtgtggaCAGCCTAGTAATCCCCACCTCTGCAAACAAAAGTGTCACCTGGGAGATTGCCCCACCTGTCCTCTCACCACTTTAGTGAAGTGCCGCTGTGGACACATGGACAAAGAATTGGATTGTAAAGACTTGACAAGTAAAGCTGATGATGCCAGGTGTCAGAAAAAATGCACAAAGaaacGTCTCTGTACCAAACACAAATGCAACCAGTACTGTTGCATCGAAGTAGATCATGAGTGTCCattaaactgtaaaaatttgttgtCCTGTGGTCTACACAGATGCGAAGAGACCTGTCACAGAGGGAGATGTAATCCATGTTGGAGAAGTAGTTTTCAGgaATTGTATTGTGAATGTGGTTCGAGCGTTTTATACCCACCGGTGCCGTGCGGTACACGCCCACCACCGTGCAACAAGCCGTGTTCCAGACCACGCCCATGCAACCATCCACCGCTTCACAACTGCCACACGGGCCAGTGTCCACCATGCACAATCTTCACCACCAGATGGTGCCACGGAAAACACGAATCCCGCCAAACCATTCCGTGCTACCAAGAGGACTTCAGCTGCGGTCTCATGTGCAACAAGGAAATGCCCTGCGGCCGTCACAGGTGCACGCAAACGTGCCACAAGGGTGACTGCCCCAATCCGTGCACGCAACCGTGCTCCATCACGAGGGCTAATTGTGATCATCCATGCAACCATCCCTGTCACGAGCCTCCGTGCCCGAACACACCGTGCAAAGCCAGCGTTACCGTTACCTGTCAGTGTGGCTTGAGGAGCAGCACCAGATCGTGCATGGAATTGGCGGGAGAGTATCAAAAGATCGCCATGTCACATCTGGCTTCCAAAATAGCCGACATCCAGCGAGGACAGTCGGTGGATATTACagatattgttaataaacaaagaaaaggaaCGCATAAAACGTTAGAATGTAATGATGAATGCCGTTTAGTCGATAGGAACAGACGTTTGGCAATCGGGCTGCAAATCAGAAACCCTGATTTGAGCGCGAAATTGACGCCCAGGTATTCAGATTACATGCGCGGTTGGGGTAAAAAAGACCCTCGCTTCTGTCAAAACATTCACGACAAACTGACGGAACTCGTCCAATTGGCAAAACAGAGTAAACAGAAGAGTCGATCGCACTCTTTTGACTGCATGAACAAGGAGAAGAGACATTTTGTGCACGAGTACTGCGAGCACTTTGGTTGTGAAGCTATGGCCTATGATAGGGAGCCAAATAGGAATATCGTCGCTACTGCCTACagagATAAATCCTGGCTGCCGAGTATGAGCTTAATCGAGTTCCTGCAACGAGAGAACGGACAGAGGAAGGTGCCAGGACCGGTGCTGAACAAAGCCGAATCGACCAGGGGCTCGGAGGGCCGGCCCAGCGAGTCGGTATCATTGAAATTGCAGAGCCGCACACTGCCACAACGACCGGCGACACCTTCCGGAGAATACGTAGACTACTTCGACAATCCTCCGTAA
Protein Sequence
MDVLEMNFGEICRTCLKKPTDFKNINEPASNAITLAEMIKYCTSITVDDGDLLPTNLCIDCVKDVETAYKFKTKTEKVNTTLREYLQAQIESFQQTLVKPSEEVQVKLEPTEESMENIEHTFLYPEVMMESTPNEPEAEMSNTDMDGSENFEDETECMEELEKFSNDFIEYRVRLNDGDDDDDDGDDDNGPIEMLPSEVVEKALIKQKNKRPKKSLNLNRKKNFSCPVCPKRYRDRNSCIEHYRIHTGERPYECNLCVFYSEEALRQHQSFGCETAPDAVPMNEAPKSIRSANNANIFPIEKPLIPAVSGPERECMSHWDPNYGAPSRGYPDAAHSSTYVNSSYGQSQGNVYTVAQIEAQYQNRNNNHNATVGEDNYRRNASNQNHFDVSTSNLQPTAVEFRPGTSYSGSSGSNGAVRKNYNSDRRRGKARGQDSSRFKSNGERTIDSRKEQNQAIKETMDILNKMKMSTTDRESSTDSRSTGGNRPPNTFERSDLKNPRYNNNRNDGEKGKQSGYRGNNNNGHQNNQREEYYGRKWNNNERRSDNWRYNRKERKEPVEEVKPVAERSEKYKSRPQQLKQKLDAGSQRERLEQMVQLRMLECLVCCERLRHTDKVWSCKQCYNIIHLSCVVKWAVSSKLEQGWRCPACQNVYHEVPTEYRCYCDKYPDPKLEPGNLPHSCGEVCGRKGRSCDHSCTLLCHPGPCPDCNIMVARACGCGSTKPMVKCSSDIQITCQNSCSKVLNCGVHACEAQCHTGPCTDCKMSISQVCHCGKEERSVLCKEDTQGIESYECGGVCGRTLSCGNHTCNKLCHPGSCDGCSSDPDSIKTCPCGQTKLLEERTSCLDPIPCCDKVCNKKLKCGQPSNPHLCKQKCHLGDCPTCPLTTLVKCRCGHMDKELDCKDLTSKADDARCQKKCTKKRLCTKHKCNQYCCIEVDHECPLNCKNLLSCGLHRCEETCHRGRCNPCWRSSFQELYCECGSSVLYPPVPCGTRPPPCNKPCSRPRPCNHPPLHNCHTGQCPPCTIFTTRWCHGKHESRQTIPCYQEDFSCGLMCNKEMPCGRHRCTQTCHKGDCPNPCTQPCSITRANCDHPCNHPCHEPPCPNTPCKASVTVTCQCGLRSSTRSCMELAGEYQKIAMSHLASKIADIQRGQSVDITDIVNKQRKGTHKTLECNDECRLVDRNRRLAIGLQIRNPDLSAKLTPRYSDYMRGWGKKDPRFCQNIHDKLTELVQLAKQSKQKSRSHSFDCMNKEKRHFVHEYCEHFGCEAMAYDREPNRNIVATAYRDKSWLPSMSLIEFLQRENGQRKVPGPVLNKAESTRGSEGRPSESVSLKLQSRTLPQRPATPSGEYVDYFDNPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-