Omur026703.1
Basic Information
- Insect
- Ontholestes murinus
- Gene Symbol
- -
- Assembly
- GCA_963969525.1
- Location
- OZ018388.1:67159641-67168836[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.16 55 7.0 0.7 3 23 404 426 402 426 0.82 2 11 0.03 10 9.2 0.6 1 23 447 469 447 469 0.92 3 11 0.023 8 9.6 2.8 1 23 473 495 473 495 0.98 4 11 0.063 22 8.2 0.2 1 23 501 524 501 524 0.96 5 11 0.081 28 7.9 0.7 1 23 530 552 530 552 0.98 6 11 0.0001 0.035 17.0 2.2 1 23 558 581 558 581 0.96 7 11 7.8e-07 0.00027 23.6 0.9 2 23 592 613 591 613 0.98 8 11 0.98 3.4e+02 4.5 5.1 3 23 625 645 623 645 0.94 9 11 7.4e-06 0.0026 20.6 2.7 1 23 651 673 651 673 0.99 10 11 8.8e-06 0.0031 20.3 0.3 1 23 679 701 679 701 0.99 11 11 1.3e-06 0.00044 23.0 0.1 1 20 707 726 707 728 0.95
Sequence Information
- Coding Sequence
- ATGCAAGGACAAGAACAAGTGGTAGTCGGATGGTGGTCCTGCGAATGGGTGGGTAAAGAGCCAATAAAAGATATACCCGAACTGGAGAATATAACTAACGCTCTTCAGAAGGGAATCATATCAGCGTACAAGAAAGCGTGCCCTCTAAAAACTAGAACAGACGAGGGAAAACAGGCCCTCTCCAGAAACCCTTTACCAAAACTCACTAGCCTTAAAAGGGAGGACGGCTCTTATACGGACTCACCTGAAAACACAGGCAAACTCTTATTGAGGACCCATTTCCCGGGCTGTACCTttaaccaggagtggagccCCACGGACACCTCCACAGAGTCCCGAACCAAACCGGATTGGGACCTAGCGGGCTCCATCGTTACCAGGGAAAAGGTAGACTGGGCAATGAGGAGTTTCTCACCATACAAATCCCCAGGGTTGGACGGGATTTATCCGGCTCTAATACAGTGGGGCAAGGATGTTAACCTGGACCACCTCTTAGGCGTGTACAGGGGGTGTATTGCCTTCAGCTACACACCCTATGCATGGAGGGAAACTAAAGTAATCTTCATACCAAAACCAGGACGCTTGGACTACACCACAGCGAAAGCATATCGaccaataagcctcacatcTATTCTATTAAAGATACTTGAGAGGCTCTGCGATCGATACATTAGGGAAATAGTCTTAGTGAAACACCCTttacatcccaatcaacacGCATACTGGAAGGCAAGTCGACGGATTCGGCCGTGCACACCGTGgggagttccggtggctctaagccagtggatctccaacatGTTGCAATGGAGGACAGCCAAGATTTCAATAGGCGACACGAAACTTGTATGCCGGGTCGCAAAAGGTTGCCCACATGGAGGAGTGCTGTCTCccctactatggaacctagtcgtagaCGAGCTACTTGAGGCACTGAATAAACAGGGCTTCTACACAGTAGGATACGCCGACGATATAACGATCCTACTTTTCGGTaactcggaaacattaacgttggaatgctgcgaagccctggaagaagtggctcgtgacaacgagAAAACTCTATGCTGGATAAAAGGACACAAAAACcgcagagggaacagaatagcagatggtttggcgaggaaggcatccggacaacgGTTTTGTTTTCTCGACGAGCAAGAGTCGGACCTCGAAAACATGACGAACAGAAAGATTTGGAGTTGCAAACGCTGCCTCGGGATGACTTTTCCAACATCTACTATGTTAAAGAAGCACCGGAAGGAAGTACACCCGCGCAGagatgacaaagatgtaaaGTACAACTATTACTATAACAAAGAAGAAAATGTGTATTCTTGCAATACGTGCGATTTAGAATGTGAGAGTAAAGAAGAGATGGAGAAGCATGCGGTAGAGCATATTGAAAAGTATAGATGTAAGCAGTGCAATGAACAATTTTACGAATTGTATAAATATTCGTTGCACATATACACGCACACTGAGGACACTTTTTACAGGTGTGGTGCTTGCAATAACACTTTTAAAGGCACAGTCGGTTTGCTCTCGCATatcaaatatattcatttgaagCAATTCAAGTACCAGTGCTCGGAATGCTCATCACAGTTCGCCGATGTGAAACGTTATAACGAACACCTTAAATGGCATCAAATTGGATCGGTTCACGTGTGTGTTGTCTGCAATAAGATCTTTCCTTACTCGAGCAATTTAATCATGCATCAGTTACGCTGTCATCGGGTATTCATCGATGGAGTACCTACAACTCAGTGTCCTAAATGTAAAAAACCATTTTCGAAGGTGGAAAATCTCGAAAAACACATGTTAACCCACACACAGAAAAAGGAGCGACGGAAAGCACATTTGTGCGACATATGCGGCAAAGGGTTTCTGTGTAAGACAAAGTTGCGCGAGCATTACAGGAAGCACACCGGAGAGAAGCCTTTCAAGTGTAATTATTGCGAAAAGAGCTTCACGATTTCTTATTATCTGACACTGCACGAACGCACTCACAGCGGTGAGAAGCCGTACGTGTGTGAGTTTTGCGGGAAATCGTTCAATCAAGGAGGACCTCTTAAAGCCCACAAGAGAACGCATACCGACGACCGGCCGTTTAGTTGTACTATTTGCGGTAAAGGCTTCACTTCTAAAGGGTCGTTAAACGCACATATGGTGAAGTGTGCTAATAAAGAGTTGgctcattaa
- Protein Sequence
- MQGQEQVVVGWWSCEWVGKEPIKDIPELENITNALQKGIISAYKKACPLKTRTDEGKQALSRNPLPKLTSLKREDGSYTDSPENTGKLLLRTHFPGCTFNQEWSPTDTSTESRTKPDWDLAGSIVTREKVDWAMRSFSPYKSPGLDGIYPALIQWGKDVNLDHLLGVYRGCIAFSYTPYAWRETKVIFIPKPGRLDYTTAKAYRPISLTSILLKILERLCDRYIREIVLVKHPLHPNQHAYWKASRRIRPCTPWGVPVALSQWISNMLQWRTAKISIGDTKLVCRVAKGCPHGGVLSPLLWNLVVDELLEALNKQGFYTVGYADDITILLFGNSETLTLECCEALEEVARDNEKTLCWIKGHKNRRGNRIADGLARKASGQRFCFLDEQESDLENMTNRKIWSCKRCLGMTFPTSTMLKKHRKEVHPRRDDKDVKYNYYYNKEENVYSCNTCDLECESKEEMEKHAVEHIEKYRCKQCNEQFYELYKYSLHIYTHTEDTFYRCGACNNTFKGTVGLLSHIKYIHLKQFKYQCSECSSQFADVKRYNEHLKWHQIGSVHVCVVCNKIFPYSSNLIMHQLRCHRVFIDGVPTTQCPKCKKPFSKVENLEKHMLTHTQKKERRKAHLCDICGKGFLCKTKLREHYRKHTGEKPFKCNYCEKSFTISYYLTLHERTHSGEKPYVCEFCGKSFNQGGPLKAHKRTHTDDRPFSCTICGKGFTSKGSLNAHMVKCANKELAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -