Omur034837.1
Basic Information
- Insect
- Ontholestes murinus
- Gene Symbol
- Zfpm1
- Assembly
- GCA_963969525.1
- Location
- OZ018389.1:60355795-60358377[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.3 1.9e+03 2.1 0.1 2 23 7 28 6 28 0.90 2 14 0.042 15 8.8 2.3 1 23 383 406 383 406 0.92 3 14 0.13 45 7.2 0.0 2 23 480 502 479 502 0.92 4 14 8.4e-05 0.029 17.3 2.1 2 23 535 556 534 556 0.97 5 14 0.0024 0.83 12.7 1.5 1 23 562 584 562 584 0.98 6 14 2.5e-05 0.0087 18.9 5.6 2 23 591 612 590 613 0.95 7 14 0.097 34 7.6 1.0 5 23 626 644 625 644 0.95 8 14 2.6e-05 0.0091 18.9 1.8 3 23 651 672 650 672 0.97 9 14 0.12 41 7.4 0.1 2 23 688 708 687 708 0.96 10 14 0.00015 0.052 16.5 1.4 1 20 714 733 714 736 0.92 11 14 9.7e-05 0.034 17.1 0.2 1 23 744 766 744 766 0.99 12 14 0.00078 0.27 14.2 3.1 1 23 772 794 772 794 0.98 13 14 1.5e-06 0.00053 22.8 1.9 3 23 802 822 800 822 0.98 14 14 0.00061 0.21 14.5 6.2 1 23 828 850 828 851 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCCAACAATACCGTGTGCCCGGTGTGCACTCTCTACCTCCGGCCCGGCATCACCTTGAAATCCCACTTGGCCAGCCACCCGAAACAAAAGGTGATCGAGGCCCTGGTTAGACTGTCGTATGAGGATCCCCAAAAACAACAGGTCGTCACCGCGGCCCCACCCAGCCCCAGCCAGCCCAGTACTAGTCATTCATGGACTCCTGAACAGCAGAACCACTCATTCATTTACCAACAGTTCGTCAGCTCTACAAATCCACCTAGCAATGTGTTAAACGTTAATCAACTCGGCCAGCAGTATGTGACTATACCAACGGTGTTCAATCCCCAGATGATGTGCCAGCCCTATGTTTATCAACAGCAGCAGGTGATTATGTCATCGTCATCATCTCAAATTCCTCCAGCCCAAAGGTTGCTTTCAATTGAGGAGGGTGAGGTTGTGCAGCAAACATCTGCGCCAGATATGGTTGTTGTAGAAAATACAGATTTCAAGGAACAGATTGTGAAGGGGTTTGAGGAATATGAGGAAGTAGGCTCGCCTATGTCAAATGCAAGTTCCGATTATATAAGAGTGCGAAAGGATTTAAACAAGTCATGTCAGACATCGGCAGATGAGCAAAAGGATTTTTATTCGGGAAATGAGGAAGATTCTCCTAGTTATGTCACTCTAACGAGTACAACCCCGGCGGTTGAAGAAAATGCGGTTGGCGACGAGCAGCCTGCAGTGGGATTAATCGACATGGACGGGATGAATTTAATGCTAAGTAGTCAAATAGTGGAGGATTTTGATTATGGCAGCCGATATGAACGGCCACGGATATTAATGAGTGTGGGGGAGTATTCGGGACGGGAGTTGGGGGACGAGAGTGTTTCAGTTGACGGAGCTAATATCCGCGCAGATGAACATATGCCTCCTCGCGGAGAACTTTCGGGACAGGAGAGTAACGCCAGCGACATGGCATGGTCTAAGGTGCAGTACACCGAACCTCAAATTGTCGCGTCTGGGTCTTACGATTTAATCGCGAGGGAAACTTGGGACGGATCCGACGCATCCGATAACGAGGGCCCACCTCTGCAATCTAGAGACCCCGCATGTCTTGATGACACCCCTACGGTTTCTGGTTATTCGGAACCCCCAATCCAATATAAGTGCCCTACGTGCGGAGAAAATTTTACCTGCTTGAAGGAGCGGCGTGCGCATCAAATGGAGAAACACCAACTTAATCCGCTAGAAATTGGTTCTAGAATTGGAAAGAAGAAGGTGAAGAAAATCGTTGTTAAGCCAAAAAAGGTGGAAGAAGTTAAGTCTGAAAATAATTTCGATAACGTATTCAAGTTAAAGCTTGAATGCGAAGTAGAGCGTTCGACAGTTATCCTAGAACCACCAGTGCTAgaggtaaaaaaaattgaagaacctGCGATTTCGAATCCGGTGGTGTGTACTTCTTGCGATGCCGTGCTTACTGATAATAACGCACTCAAACTACATCGAGAAGAAGTGCATAATTTTCGCAGCGAAGACCGTTACAAATGTAACGTGTGTTTGGAAACCTTCCAATGCGAACCGAAGTATACCGAACATTTACACGTCCACCCGCTAGAGTGCAGGTTATgcggaaaatatttttaccgtCGGCAGAACATGCAGCTACACATGAAGCGCCATCTAGGGATACGTCCATATAAATGCACAGTTTGTGAAAAGTCGTTTTTAACGAAACAAAAACTGGACGAACATCGTAATATTCATACAGGCGAAACTCCGATCAAGTGCACTATGTGCGACGAAACTTTTAAGCGCCATTCAAATCTTGTCCAGCATAGAAATCGCCACCATTACAATCTGAAACGTAAAACGAAGGATTATATATGCATGTGCGGAGAGGTCTTCCACTCGAAAAAGAAGTTGGCATGGCATAAGGAAATTCACGATAACAAACCGAAGGCGTGTACACAATGTAGCGAAAAGTTCATCCACTCAGCGAGCCTTACGCGACACATGCGCCGCGCACATAACGAGCGCTTCGTGCCGAAAACCTCGCGCGACAACGAGAACGTCGAATGCCCCATCTGCAAGGGTATCTACCTCCGGTCCTCTCTCGACGTTCACATGAAAACCCACAGTGGAAAACGCCCGTTCACATGCTTAATCTGCAACAAAGATTTTACCACAAAGTGGAATTTGAAGTTGCACAAGTGGACACACGCAGCGCGCAACAACAAACCATTCAAATGCGACCAGTGCAAAGGCGCGTTCATTCGCGAATCCGACTACATCGCCCACATGAACTCGCATAAATCCATCAAGCCGTACACTTGCAACTACTGCGGCGCGCAATTCATCCGCAAATACAACTGCCTGCGGCACGTCCGGGAGCATGAGAAAGTGAAGACGTACGGATGCCAGGTGTGCGGGAAGAGCTTCCACCGGTCGTACTACTTAAAGGATCATATGAGGGTGCACAGTGGGGTTAGGCCGTATTCCTGTCACATTTGTGGTAAAACTTCGGCGACAAAGAGCAACCACAACAAGCACGTGAGAATACATCACGCACGCGAGCCCGTCAGCACTGAGAATTGA
- Protein Sequence
- MEANNTVCPVCTLYLRPGITLKSHLASHPKQKVIEALVRLSYEDPQKQQVVTAAPPSPSQPSTSHSWTPEQQNHSFIYQQFVSSTNPPSNVLNVNQLGQQYVTIPTVFNPQMMCQPYVYQQQQVIMSSSSSQIPPAQRLLSIEEGEVVQQTSAPDMVVVENTDFKEQIVKGFEEYEEVGSPMSNASSDYIRVRKDLNKSCQTSADEQKDFYSGNEEDSPSYVTLTSTTPAVEENAVGDEQPAVGLIDMDGMNLMLSSQIVEDFDYGSRYERPRILMSVGEYSGRELGDESVSVDGANIRADEHMPPRGELSGQESNASDMAWSKVQYTEPQIVASGSYDLIARETWDGSDASDNEGPPLQSRDPACLDDTPTVSGYSEPPIQYKCPTCGENFTCLKERRAHQMEKHQLNPLEIGSRIGKKKVKKIVVKPKKVEEVKSENNFDNVFKLKLECEVERSTVILEPPVLEVKKIEEPAISNPVVCTSCDAVLTDNNALKLHREEVHNFRSEDRYKCNVCLETFQCEPKYTEHLHVHPLECRLCGKYFYRRQNMQLHMKRHLGIRPYKCTVCEKSFLTKQKLDEHRNIHTGETPIKCTMCDETFKRHSNLVQHRNRHHYNLKRKTKDYICMCGEVFHSKKKLAWHKEIHDNKPKACTQCSEKFIHSASLTRHMRRAHNERFVPKTSRDNENVECPICKGIYLRSSLDVHMKTHSGKRPFTCLICNKDFTTKWNLKLHKWTHAARNNKPFKCDQCKGAFIRESDYIAHMNSHKSIKPYTCNYCGAQFIRKYNCLRHVREHEKVKTYGCQVCGKSFHRSYYLKDHMRVHSGVRPYSCHICGKTSATKSNHNKHVRIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -