Omur020704.1
Basic Information
- Insect
- Ontholestes murinus
- Gene Symbol
- -
- Assembly
- GCA_963969525.1
- Location
- OZ018388.1:14990817-14995442[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.14 48 7.2 1.2 1 23 302 324 302 324 0.90 2 13 0.19 68 6.7 0.1 1 22 329 352 329 355 0.91 3 13 0.016 5.6 10.1 1.4 2 23 406 428 405 428 0.93 4 13 7.4e-06 0.0026 20.6 1.5 1 23 434 456 434 456 0.98 5 13 0.0098 3.4 10.8 1.0 1 23 461 484 461 484 0.91 6 13 2.3e-05 0.008 19.0 4.3 1 23 490 512 490 512 0.97 7 13 5.6e-05 0.019 17.8 1.1 1 23 518 540 518 540 0.92 8 13 1.2e-06 0.00043 23.0 3.1 1 23 546 568 546 568 0.98 9 13 2.8e-06 0.00098 21.9 0.4 1 23 574 596 574 596 0.99 10 13 1.1e-05 0.0039 20.0 6.9 1 23 602 624 602 624 0.98 11 13 0.14 48 7.2 4.3 2 23 631 652 630 652 0.97 12 13 0.00054 0.19 14.7 0.7 1 23 658 680 658 680 0.98 13 13 1.2e-06 0.00041 23.1 0.5 1 23 686 708 686 708 0.96
Sequence Information
- Coding Sequence
- ATGGACGCCCCAATACTTTTATCCGATTTAACGATATGTCGCCTTTGTGCTGAAGATAACGATAACGGCACCGTCCTCTTCACCAACGAAGCCGGCAAGGAGAATTTAGGCGACATCGTCAACAAGTATCTACCAGTAAAAGTGGAAAGGGATGGGAGGTTTCCCTGCACCCTTTGTCCAGGATGCACAATCCAGTTGGAAGCCACGAAATCATTCTTTGATCTCATCATCCAGGGGCAAGAAAAGTTACGGAGTTTGTACAACGAACAGTTGGACACGATACGCAGGCAGGAGAAGCAGAAAGAGGATTTCGAGAATGTGTTCAAGGCAGTTAATCCAAATTCTTCCATGCAGACTTATTCCGTGCAGACGGATAGTACCGGTGAAAAAATTTATATCCAagtggTGACAGATGGCCCCCTTTTTTCACCAAGTCATGAAATGACATTAAGGGCAGAAGGTCTGGACAAACCAAAGAAAAAGCGGGGAAGACCTCCCAAGCCTCAACATCCTCCTGGACATAATGAACCTGAGCCTGCTGTCGTTGAAATGAAGGAACCAGAAGAGGAGTCAGATGGTGAAGTTGATGGTAAAAGACGGAGGCGAATAAAGAAACCGTCTAGATATTCAGAACTCATACAGGGTAAAGAGTTGGATCGGATATTCAGAGAGGAAGGTGTCATTGATGAAGATGAATGCTCTTCAGAAACAGAAAGCAAACGTAACTCTCTTAGAGATCCTCTTGCAGTAGATGCAGGGCTAGAAACAAATGAAGTTATTGGTCACATGCAGGGAAAGGATGGTGAAAATCTGGGTCAGTTGGTGATGGTAAAAGGAGGAAACAAAGTCCGCTTGAAGCATAAAACTGAATTAgTATCACCTTCGTCTAAAAAAAAGGATAAATTTGAGTGCGAATTTTGTGGCAGGGTCTTCTTGCATTTAGCTCGACTTGAAATTCACAAATCATTCCACAAGAACATTAAATACCAGTGCGGAACAGCGGGCTGTGCCatgaattttgaaacaaaaacatcCCTCGATGAACATCAAAAAGAAATGGAACACACAGGGTCAACATTAAttgaatgtttagaaaattatgGTCAAGTAGAACTTTTACCACAAACAATTTCAGATGTAAACTCATCGGCACAAACAGAATCTACTCAAGTTGAAGATACAAGCTCTCAGTTAACTAAGGCAGAAACAAAAATGTCGTGCGAAATTTGTAGCAAAACGTTCTCCTGTAAGCAAAATTATGAAATCCACGTTAAAGCCGTCCACGAGAATCAAAAACCCTACAGCTGTGATAAGTGTGACAAGAAATTCCCTTATTTGAACAGCTTGAAAAGCCACATGCTTTCTCACAATGTTAAAACCTACCCGTGTGATTCTTGTGATAAGGTCTTCCACCATCCCAGCAGCATCGTCTATCACAGGGAGGCAGAACACAACAATGGGAGGAAATTTGTTTGTAACAAGTGCAAGAAAACCTTTAAGCATAAACAGTTGCTTTTAAGACATCAAGTGGTGCACACCAACGAGAGGCCGCACACTTGTGGGTATTGTGACTTGAGTTTTAAGACTAGGGCCAATTTGTTGACACACATACCGACCCACACTGGGGAGAAGAAGTATTACTGCACTTTGTGTGGACAGTCGTTTTCGCATAAGACATCTCTGACTTTGCACATGCGTTGGCACAATGGACAAAAGCCGTACGAGTGTGATAtctgtttgaagaaattttcacaGAGGGGGAATTTGGCTGAACATAGAAGGATTCATACAGGTGAAAAACCATATTGCTGCAACTTTTGTGGTCGGAGGTTTACTACTTCTTCCCAGTTTAAATTGCATATGAAACGGCATTCTGGTGAGAGGCCTTGGAAATGCGAGTATTGtatgaaaacatttttgcaCAAGGATACCTGGAAAAGTCACACGAGACGTCATAGAAATGAAAGACCGTTCCAGTGCCAACAATGTTTAAGAGGTTTTACGGAGCAATGGGCATTGAAAAAGCATGAAAGGCTGCACACTGGGGAGAAGCCATACTTATGTGAGATATGCAGTAAAGCATTTGCCGACTCTTCCAATCTGACGAAGCACAAAAAGGTCcactttaataaaaacaaaggtAAAAGCAAAGAAGTCGCCCAGAATATTATTGATGTCAATGTAGCAGGAAATCATGAACCAGTTTCAAATCAAATACTATACTTGACTTATCAAGATAATGCATCGAATGAGGAACAGGCACAAACATTGGTTCACATCGTTGATACAATGAATGGTAATGGTGCTGAGGAAAAAATTGATAACGACCTATTTGCCAGTACAGGTATATTAAAAGAGAATGACAATGATGAAGTCTCTTTGGATATTCAGTTACAGcAACTTGTGGATAATGAAGGAAATGCAATTAGTTTAACCACAGACGATGGAcaacaaataaaagtagtaTCCACAATTGTGGATGATGAACACAGCATTCAAGGATTATTACCTGATGGTACATTAATTCCTATTAATCTTACCATGCAGGATGGTAAACCTGTCGCCTCAGAACAAGAGACTAAAActgatattattgatattaagGAAAATATCCTTCTTCTATCCCAGGATGGTCAACAGATGGGAGATAAGATGCAATACATAAGCAAATTGTCCGAGCCAAATTTACATCAAAAACTAGAATTCCTTACAGACGATAGCCAAAATATGTGTTTCATCTCTGCTTACCCCAATGAAAGCACAATAGACAGCCCTTACATCAACATAGAGTAA
- Protein Sequence
- MDAPILLSDLTICRLCAEDNDNGTVLFTNEAGKENLGDIVNKYLPVKVERDGRFPCTLCPGCTIQLEATKSFFDLIIQGQEKLRSLYNEQLDTIRRQEKQKEDFENVFKAVNPNSSMQTYSVQTDSTGEKIYIQVVTDGPLFSPSHEMTLRAEGLDKPKKKRGRPPKPQHPPGHNEPEPAVVEMKEPEEESDGEVDGKRRRRIKKPSRYSELIQGKELDRIFREEGVIDEDECSSETESKRNSLRDPLAVDAGLETNEVIGHMQGKDGENLGQLVMVKGGNKVRLKHKTELVSPSSKKKDKFECEFCGRVFLHLARLEIHKSFHKNIKYQCGTAGCAMNFETKTSLDEHQKEMEHTGSTLIECLENYGQVELLPQTISDVNSSAQTESTQVEDTSSQLTKAETKMSCEICSKTFSCKQNYEIHVKAVHENQKPYSCDKCDKKFPYLNSLKSHMLSHNVKTYPCDSCDKVFHHPSSIVYHREAEHNNGRKFVCNKCKKTFKHKQLLLRHQVVHTNERPHTCGYCDLSFKTRANLLTHIPTHTGEKKYYCTLCGQSFSHKTSLTLHMRWHNGQKPYECDICLKKFSQRGNLAEHRRIHTGEKPYCCNFCGRRFTTSSQFKLHMKRHSGERPWKCEYCMKTFLHKDTWKSHTRRHRNERPFQCQQCLRGFTEQWALKKHERLHTGEKPYLCEICSKAFADSSNLTKHKKVHFNKNKGKSKEVAQNIIDVNVAGNHEPVSNQILYLTYQDNASNEEQAQTLVHIVDTMNGNGAEEKIDNDLFASTGILKENDNDEVSLDIQLQQLVDNEGNAISLTTDDGQQIKVVSTIVDDEHSIQGLLPDGTLIPINLTMQDGKPVASEQETKTDIIDIKENILLLSQDGQQMGDKMQYISKLSEPNLHQKLEFLTDDSQNMCFISAYPNESTIDSPYINIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -