Omur086650.1
Basic Information
- Insect
- Ontholestes murinus
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963969525.1
- Location
- OZ018396.1:54620350-54626609[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00015 0.052 16.5 0.2 1 23 257 280 257 280 0.96 2 13 0.0017 0.6 13.1 0.2 3 23 314 335 312 335 0.93 3 13 0.058 20 8.3 4.8 1 23 342 364 342 364 0.99 4 13 0.0009 0.32 14.0 2.0 1 21 370 390 370 391 0.94 5 13 2.1e-08 7.4e-06 28.6 1.4 1 23 402 424 402 424 0.98 6 13 0.00016 0.057 16.4 0.4 1 23 434 456 434 456 0.99 7 13 0.0011 0.38 13.7 0.2 1 23 462 484 462 484 0.97 8 13 2e-05 0.007 19.2 2.5 1 23 490 512 490 512 0.99 9 13 5.6e-06 0.002 21.0 2.6 1 23 518 540 518 540 0.96 10 13 1.8e-05 0.0063 19.4 2.8 1 23 546 569 546 569 0.95 11 13 0.0017 0.61 13.1 1.6 2 23 576 597 575 597 0.95 12 13 1.4e-05 0.0049 19.7 0.5 1 23 603 625 603 625 0.98 13 13 3.3e-05 0.011 18.6 3.7 2 23 632 654 631 654 0.94
Sequence Information
- Coding Sequence
- ATGGACGCCCGGGGAGGCCGAGCGTTGGCCCCCGGGGGCCTACGCAATGCAGCCGAAGAGTTTAAGCGTCCGGAAATTATCACAAACGGAAAGCGGCCAAGCATTGTCTCCCATATCCACGTGTGTGCCCGCCGTTCGGGACGCGAAGCGATGGCGACTATTGGATACGTGCCGGAAAATCGGGTTCCTTACCTCTCTTACAACGCTTCAGGTGGTGCAGGACTTGATAACATGCGTATTTCTATATATTCGACTGATTACGCGATTATGGCGGAAGATACTCAAATGATAGGGAAGCTTGAGCCGATTGCTCAGGGCGAGGAAGAAGAAGTGGATATGAAGACGTTAGGGCTGTATTCACCGCAGGAGCACATTCAGGTGCTTGAGGAAGAGCATTTGAATAACACCGATGGAAATTTACACATTAATACGTACCAGGTCGTCGAGGAAGTTGTTGATGAAGgtGAGTTTCAAGAGGATGAAAGTGACTCATCTCAGCATGTGCTTATAAGAACCGAGGACGGTGCCTACATCCAGGAAGATGGTGAAATGTTTGTAGAAGACGGTACCCAATTCGAAGAGGAGGAGTACGAAGAAGAGAATCAGTACGCCGAGGAACAGTATGAAATCAGAACTGAAGAAACAAAACGTGAACAAGATGCAGAAGATGAAGAGGAAGAAGAGTATGAGGAGCAGACATCCTTACCTCTAGATCCCGATGACCCTGATCCAGATCCAGATTTCGATCCAAACTATCAAGCTGATGAATTCATGTGTGCTATTTGTATGAGGGTTTTTAAAAGTTCAGCTagtttAAAACGACACATAACAGTGGTTCATGATCAAGAAGCAGATAAAAATGAAGATCCTTTGGCTTTTGAATTATGTAGCTGTTGTGGAGAGCCTGTGGATTCTGCACATTTgactGGCAGCATAAATTGTGCAATGTGCAATAAACTATTTGTGCTGCAAAGTAATTTAGTAAGGCATCTTAGTCTTGAACATCCAGAcggcaataatttatataagtgTTGTGATTGTATGCGTACTTTCGATAGTAGAGAGGGTATACACAAACATATGCTCTCACATCCATTGGCCAAGCCGTTTTCTTGCAAGGCTTGCAACCGTGATTTTACCAGGAAGTATCACTTGGATAGGCATGTACAGCAAACTGGTTGTGACGGTACACCTAGGAATCAATTTAAGTGTCAAGTGTGTGACAAAAGTTTCTCTCGGAAAGATAACCTAAGAGATCACCTCAGGGCCCATGCTGgacaaattaaaaagaaaaaggtTTTCACCTGTAGTTATTGCAAGAAAGATTTTCAGGGAGCAACATTATTGGCTGTACATGTGAGAACTCATActggtGAGAAGCCTTTTGCGTGTGACTTGTGTCCGAAGTGGTTTCCTTCAAGCGGTGCAATGAAAAAGCACAGACGGATGCATACTGGTGAACGACCTTATCAATGCATGCAGTGCAAGAAGAGGTTTGCTGCAAAGGAAACTCTTAACAGACACACACGCACCCATACCGGTAACAAACCTCATCAGTGCTCTTATTGTGGGAAAGCCTTCATTCAAGCGACCCAGTTGAGGGCTCACATTTTCCACCACACTGGAGAGCATGCCTTTACCTGTCCCCACTGCAACAAGGCATTTAATCGTCGGGTACGCTTGACAACTCATATCAAATTCGTGCACGAAGGTGCCAAGCCGATGCAGTGCAGCCAATGTGACAAGAAGTTCTACAGGAAGGAAGACCAGAGTCGGCATGAATTACTACACACTGGACAGAAACcttTTGAATGTGAAATCTGCCATAAGCGCTTCGCCGTTAAAGCCTCCCTGAAAATTCATGCGAATGTCCACCGTAAGGAACAGCCCTGTTCATGTTATGAGTGTGGTCGTGCTTTCATCCGCCAAGACTGTCTTTTGAGACACATGCGTGCTAAGCACAGGGACGCCCTCGAAGACATAATGGTGTCTGCGGAAAAACGACGCCTGCAGCAGCAACTTCTGACGGCAGCGTCGGACGCAGCCAACACTAACAAGTCGGAAATAGTGGAATCGGGTATTTGGAACGAGCTCACATTGACAGACTCTATCAGAGAACTACTGGGATTGCTGGTGGACGAAAACACGCTGACATCGTTCGGCTGGCCCGATTCTCCGGTTGACAAAATTTTAGACTGCGTTATAAGACGCTGCGGGCACGACCCCGCCTCTGCGGAGGACTTCGACTACATCAACAGAATCAGAGAAAACGCGAAGTTGTTGTTCACGGTTGTCATCGACGACGAGGCTGTTAAATCATTGCTGAATAATCAAACTGTAGATGAAGTCATTCAACATGTATTGCGGTTAGCTAAGAACGAgtga
- Protein Sequence
- MDARGGRALAPGGLRNAAEEFKRPEIITNGKRPSIVSHIHVCARRSGREAMATIGYVPENRVPYLSYNASGGAGLDNMRISIYSTDYAIMAEDTQMIGKLEPIAQGEEEEVDMKTLGLYSPQEHIQVLEEEHLNNTDGNLHINTYQVVEEVVDEGEFQEDESDSSQHVLIRTEDGAYIQEDGEMFVEDGTQFEEEEYEEENQYAEEQYEIRTEETKREQDAEDEEEEEYEEQTSLPLDPDDPDPDPDFDPNYQADEFMCAICMRVFKSSASLKRHITVVHDQEADKNEDPLAFELCSCCGEPVDSAHLTGSINCAMCNKLFVLQSNLVRHLSLEHPDGNNLYKCCDCMRTFDSREGIHKHMLSHPLAKPFSCKACNRDFTRKYHLDRHVQQTGCDGTPRNQFKCQVCDKSFSRKDNLRDHLRAHAGQIKKKKVFTCSYCKKDFQGATLLAVHVRTHTGEKPFACDLCPKWFPSSGAMKKHRRMHTGERPYQCMQCKKRFAAKETLNRHTRTHTGNKPHQCSYCGKAFIQATQLRAHIFHHTGEHAFTCPHCNKAFNRRVRLTTHIKFVHEGAKPMQCSQCDKKFYRKEDQSRHELLHTGQKPFECEICHKRFAVKASLKIHANVHRKEQPCSCYECGRAFIRQDCLLRHMRAKHRDALEDIMVSAEKRRLQQQLLTAASDAANTNKSEIVESGIWNELTLTDSIRELLGLLVDENTLTSFGWPDSPVDKILDCVIRRCGHDPASAEDFDYINRIRENAKLLFTVVIDDEAVKSLLNNQTVDEVIQHVLRLAKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -