Omur012321.1
Basic Information
- Insect
- Ontholestes murinus
- Gene Symbol
- -
- Assembly
- GCA_963969525.1
- Location
- OZ018387.1:48440234-48443098[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1e-05 0.0036 20.1 3.4 1 23 47 70 47 70 0.97 2 18 0.00036 0.13 15.3 0.8 1 21 85 105 85 107 0.92 3 18 0.0021 0.75 12.8 2.1 3 23 115 136 114 136 0.94 4 18 9.6e-07 0.00034 23.4 0.5 1 23 141 163 141 163 0.97 5 18 5.4e-05 0.019 17.9 0.2 1 21 169 189 169 190 0.96 6 18 0.014 5 10.2 1.6 1 23 212 235 212 235 0.92 7 18 0.03 11 9.2 2.6 1 23 260 283 260 283 0.97 8 18 0.00023 0.08 15.9 0.4 2 23 289 311 288 311 0.93 9 18 0.42 1.5e+02 5.6 1.9 1 23 384 406 384 406 0.97 10 18 0.00031 0.11 15.5 3.7 1 23 411 434 411 434 0.98 11 18 0.0041 1.4 11.9 0.1 1 21 450 470 450 472 0.95 12 18 0.00025 0.087 15.8 0.6 2 23 479 501 479 501 0.90 13 18 1.6e-05 0.0055 19.5 0.2 1 23 506 528 506 528 0.97 14 18 0.077 27 7.9 0.3 1 21 534 554 534 555 0.93 15 18 0.06 21 8.3 2.4 1 23 577 600 577 600 0.91 16 18 0.00076 0.27 14.2 2.2 1 23 625 648 625 648 0.98 17 18 0.0024 0.83 12.7 0.2 2 23 654 676 653 676 0.91 18 18 0.00021 0.074 16.0 1.5 2 23 682 704 681 704 0.95
Sequence Information
- Coding Sequence
- atgATTGACGTGGCTGAAACCGTGGTTGTGAAGAAGGAGTATATGAGTGAAGAGGACTCGTTTGAACCTGTTAGCAATAACGAAGTCCCCATTATCGAATTTGATATTGAAGTGGCTAAAAAAACGCTGGGAGTTCCATATTCTTGTCATATTTGCAATAAAACCCTCACCAGATTATATGGCCTAAGGCGACATATACAAAGGAAGCACTTTACTGATAACTGCAGAGTGACAAATGAAGGTGTTATTTGTTACCTTTGTAATATATGCGGATTGTCTTTCAATAAAGAGGATGAGTTTCAGAAGCATTATAAACCACATCTAAAAGAGAAGGCCGTTTTTTGTGATGTTTGCAAGAAACAATTCTCTTCGCTGCACACTTTAAGGATACACAAGGCATCAGTGCATTTCGATATTAAGTTTTCTTGTGACATCTGCGGAAGAAAGTTTTCTACACAATGGTCATTAACCGATCACTTGAACTTGCATCTAAATAGGCGCCCTTATAAATGCGTAGGTTGTGGGAAAGGTTACGCTTCCTCCTCAGGATTAAAGAGCCATATATGCGCTAAGGATGGCAAAGGGGAAAACAGTTGCAGTCAGCAAGAAGCAAATCAAGTTGAGGTAGAGGAATACTTCTGTCATATATGTATCGTATCGTTTGCCAACAGGGAGGAGTTAACAAAACACTTTTTGCTAAAACACAAAAAAGAGCGACATGAgaatatgaataaaaacaataaatacaaagtGGTAACCGAGAGTGGGATCGTGAAATACAAATGCGAGTTCTGCGAAATGGTTTTCGACTACTTCAGGACCATGCAGACGCACAGAAAAAATATGCACGCGAAGAACGAATTAAAATGTGACGTGTGCGATAAGGTGTTTGCCTCCTTGAGACGGCTGCAGTGGCATCAGGATCAGAAACACGTTAAAAAGAAGATTCCGTGCTCTATCTGCGGGGAAAAaaCGGTTGATGTCGCTGAAACAGTAGTAGTGAAGCAAGAGTTTTTCTTTGAAGACGACTCTGGACGCGAATCGCAATTTTATGATGAAAGCAAGGACGGAGAGGATGCCGAAGGAGGAATAGACATAGATGCCGTTAAGGAACGCTGGCAGGTTACAAGCGATAATGGAATCATCACATATAGGTGCGACATTTGCCAATGCGAACTGTTCGACTCGGACAGCGTGTTAATTCACTTCAAGAAGCACTACGAACCACCGTTCACTTGCCATATTTGTAATCAAACGCTGACCAGGATATTTGGTCTGAAACGTCATATAAAACGTAAGCATTTCGTGGAAACGTGCAAAGTGACAAGTGCTGAaggtgttatttattatatatgcgATATCTGTGGAATACCTTCTAATACCGAAGAAGAGTTTCAAAAGCACTACAGGCCTCATATCAATGAAAAGTCAGCGTCCTGTGATGTGTGCGAAAAAACGTTTTCTTCGTTAAATGCTTTGAAGAAGCACAAAACCGCAGTGCATTTCGCTGTTAAGTTTCCTTGCGATATCTGCGGAAGAGAGTTTGCTACAAAGTGGACATTAACAGATCATAAAAACCTACATTTAAACCGGCGACCATATAAGTGCGTCGTGTGTGGAAAAGACTACCTTTCTACCTCTGGATTAAACAGCCACGTCTGCATCAAAGACTGCAAAGGACAAAATTGTTACAGTCAGCACGAGGCTGCTAAAGTCGAAATCAAGGAATACTTCTGTCATATTTGCATATTATTTTTTGCCGATAAAGAGGAACTGACCAAGCATTTCTTTGTTAAACACAAACAAGAACGAAAAGAGAACATGGAGAAGGATAAGAAACACGAGGTGGTAACTGAGGGTGGGGTGGTAAAGTATAAGTGCGATTATTGCGACATGATCTTCgattatattagaaatatgaaGACACATAGGAAGAAGATGCATggaaaaaatcagttaaattgTGACATTTGCGGTGAAGTATTTAACACGTTGATACGTTTGCAGTGGCACCGCGACCAGAAGCATGTAAAAAGGAAGATTCCGTGTGATGTGTGCGGAAAAAAGTATTCATCGGGGCCGAATTTGAAGAAGCACAAGCAAAAATGTCATGTTTGA
- Protein Sequence
- MIDVAETVVVKKEYMSEEDSFEPVSNNEVPIIEFDIEVAKKTLGVPYSCHICNKTLTRLYGLRRHIQRKHFTDNCRVTNEGVICYLCNICGLSFNKEDEFQKHYKPHLKEKAVFCDVCKKQFSSLHTLRIHKASVHFDIKFSCDICGRKFSTQWSLTDHLNLHLNRRPYKCVGCGKGYASSSGLKSHICAKDGKGENSCSQQEANQVEVEEYFCHICIVSFANREELTKHFLLKHKKERHENMNKNNKYKVVTESGIVKYKCEFCEMVFDYFRTMQTHRKNMHAKNELKCDVCDKVFASLRRLQWHQDQKHVKKKIPCSICGEKTVDVAETVVVKQEFFFEDDSGRESQFYDESKDGEDAEGGIDIDAVKERWQVTSDNGIITYRCDICQCELFDSDSVLIHFKKHYEPPFTCHICNQTLTRIFGLKRHIKRKHFVETCKVTSAEGVIYYICDICGIPSNTEEEFQKHYRPHINEKSASCDVCEKTFSSLNALKKHKTAVHFAVKFPCDICGREFATKWTLTDHKNLHLNRRPYKCVVCGKDYLSTSGLNSHVCIKDCKGQNCYSQHEAAKVEIKEYFCHICILFFADKEELTKHFFVKHKQERKENMEKDKKHEVVTEGGVVKYKCDYCDMIFDYIRNMKTHRKKMHGKNQLNCDICGEVFNTLIRLQWHRDQKHVKRKIPCDVCGKKYSSGPNLKKHKQKCHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -