Omur031229.2
Basic Information
- Insect
- Ontholestes murinus
- Gene Symbol
- PRDM13
- Assembly
- GCA_963969525.1
- Location
- OZ018389.1:27745732-27766257[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.038 13 8.9 1.5 2 23 185 207 184 207 0.93 2 20 5.1 1.8e+03 2.2 0.2 1 21 339 359 339 360 0.94 3 20 0.18 63 6.8 2.5 1 23 389 412 389 412 0.92 4 20 0.0015 0.53 13.3 5.4 1 23 553 576 553 576 0.97 5 20 0.0003 0.11 15.5 1.8 2 23 588 609 588 609 0.98 6 20 0.00032 0.11 15.4 0.1 2 23 617 639 616 639 0.96 7 20 9.1e-06 0.0032 20.3 0.7 1 23 649 671 649 671 0.98 8 20 6.2e-06 0.0022 20.8 0.9 1 23 673 695 673 695 0.98 9 20 0.00052 0.18 14.8 0.2 3 23 720 740 719 740 0.97 10 20 0.00013 0.047 16.6 1.5 1 23 768 791 768 791 0.96 11 20 0.078 27 7.9 0.1 2 23 803 824 802 824 0.96 12 20 2.1e-05 0.0073 19.2 5.7 1 23 853 875 853 875 0.98 13 20 4.6 1.6e+03 2.4 6.2 3 23 896 916 894 916 0.96 14 20 0.0018 0.64 13.1 0.2 2 23 957 979 956 979 0.95 15 20 6.1e-06 0.0021 20.8 0.0 1 23 995 1017 995 1017 0.95 16 20 0.0048 1.7 11.7 0.1 1 23 1041 1064 1041 1064 0.95 17 20 0.0032 1.1 12.3 0.1 2 23 1075 1096 1074 1096 0.97 18 20 2.4e-06 0.00083 22.1 1.3 3 23 1106 1127 1105 1127 0.98 19 20 0.00011 0.038 16.9 0.3 1 23 1136 1158 1136 1158 0.98 20 20 0.0014 0.48 13.5 0.5 1 23 1185 1208 1185 1208 0.98
Sequence Information
- Coding Sequence
- ATGTCTGGGGCCAGGACAGCAAATTACACATCATGCTGCCGACTATGCTTGGCCGATAAATCCACCTCCTTGAATAGCATTTACGCTGGGTACTCCGATGCCGAGGCGCTGGTCGagaaaataaatgcattaatcGGTGTACAGatCACAGCACAAGATAAATTTTCAACCATGCTGTGCGACAGATGCTACCATATGGTCAACAACTGGGATGGATATAAGAAGACGTGTCTGCAAAATCAGACAAAACTACAAGAATGGAtggataattttatagaaaatggcATTTCTACACCAATCCAAATAAAAGAAGAACCAACTGATGTAGATAAAGATCCAGTAATTTCACTAGATGGATTGGAGGAGgaTATTCTGGTCAAACCAGAGCCCATCGATTTAGTAGATGTTGGGGATGATTTTATGGACATGCCACCACCTTTATCTCCACACCCTCCACCATTACCTCGCGAAGTACAGGATGAAGACACTAGTAGTCAAGaaaaaaatacaaatgtggCTGGGGTAATCttagaaaagagaaaaagttcCCTGTGTTGTTTGGTGTGTGATAAAGTCTTGAGTAACATCAGCAATAGAAGAAAGCATGAAAAGGTTATGCATGGGCTTCACGGTGGTAAAATTAATACACACGATAGCTATTCAAcccgaataaataatttagAAGTGTTGGAGATGCCAGAATCGGAAAATAGCCAGGAGAGTCAAATGAGTCAGCAGAGCCTGCAAAGCGGCAGCTTGGCGTCTATTGCATCCGGCCCTACTACGGAACAGGATCAGGAGAAAATCGACTTTGCGGCTGGTCTGCGCTTGCAGTCCAAGTCGGCTACCCCAAAACCATCTGATCTGTCCAAAATCGAGTGGAACTACATCGAAAAGAACAGGATTATGCTGACCATGTTCAAGAGGGCGACTTGTTGCTGCCACAATCAAAATTATGGTTCTTGGAAAAAGTTGCTTGGTCACTTAAGGCAGTTGTATTCTTGGTTCACCCCATATACATGTTACAACTGTTTAGTTGTATACCCTGGAAGGTCGGGAAAGATGAGGCATCAGATGAAGTGCCCGAAAGTCGAGTATGAGGATCTAATTAGATTAATCGAGATGCGCACCCGTACTGATGAAAAGATCcgattatatcaaaattacaaGTGCACCCAGTGTGAATATATGTATTCTTTCTATGCTGATTACTGTGAACATGTTGACAATGAGCACGTACCTGAACAAGGGCCGTATTCATGCATCTGTATGTCTACATTTGATAACAGTGATGAGTACATACAGCACATACATAAATCTTGCTACTTGAATTATTTCTGTGATATTTGTTTCATGCTCACAGGTAACTTGGATGACTTTAAGCAGCATTGCGAAGAGTTTCATGATAATGATGATGGCTTTGAATTCATGCCACTGCACCCTAATTTCATGGTGTTAAACAATATGCAAATTAGAAGAATGCTGGTAAGTGGGAAGGAAAAACAGCAGAGAGAGCAGGAGATGGAAAAGCCACCCAAACAGTTCATGAAAAGGGAATTGCAAATGATTAAATTGGAGCAGGATATTAATGGAGAACCTCAAGATATTAAAGTGGTTAATCCTCTGGCATTGCCAATTCAGGCAAATAAACAGGTTTTTACATGCTCTATCTGTCAGCAGGGATGCTCTAGTTATCATAATCTATTGAAGCATATGAAATTGTATCATGGTGTGGAGACtgttgatgataataatagaaatacttGTGATATCTGTGGAAGTGAATTTAGTAATTACCATAACATGTTAAGACATCGACGAGTGCACGATCAAGATATGAAACAGCTGCAATGTCCTGAATGTCCAGAAAAGTTTAGGTTGAATATAGAGCTGAAGGAGCATTTGAGTACTATTCATTCGAGTTCACGGCCTGTTCGTTTGATATACAGATGTAGCGAGTGTGgcgaatcatttaaaaatacccAAATGTTGGAGGCACATCGTCAAAACCATCTGTATACATGCGAGGAGTGTGGTAAAGAATTTAACACTAACAATGAGTATGAGCAACATAGAAATTCGCACCTTAATATTACTTTAACTAGAGATCCTAACACTatgaattataaaagtaattccaGTCCTGGAAATAATATGTGCCAATTATGCGATCGGCAGTTTGAAAATGATGAGGATCTACAGGCGCACATGCAATTACATGATACGATGCCGACTTTGGAAATGGAAGAAGAGGAGGGTGAAGACTTTAGAGATGATGAACTAGATTCAAAAATGCGAAAATACGCTTGTCATGATTGTAACAAGGTATACTCGAGCTCGAGAGGGTTGTGGGTGCATAATAAACGCTACCATCCACACAGGCGGACGAACAAAGATTTTCCCAAGCCTTGCGACGAGTGCGGGCGGGTAATAACCACGCTTCCCGCTTATTTGATGCATAAACAGATGCACACAAGAAACGCCTTAAAGGCCATGAATATACACAAGCATCAACAAGTGAAACTCCCTTCTTCAGCAGCAGATGATTCTGATTACCACACATGCAAACGATGCTTTAAAGTATTTGCTAATCGTTACAACCTTAAGACCCACATGAAATCTCACGGAATCAATGTGAGTCCTTCCAGGGCATATACTAAAGGGAAATATCAGAAAACTTACTGGTGTGACATATGCCATCAAGCTTGCCATGGCTTGCATGAGTTAAATCGTCATAAGCAAGAGCATATGAATGAGGACTCATCACATGAATTGGAACCTAAGGTGGAAATTGTTGAGACAAAAAGGCCAAGGAAAGTCTTTATGTACTCAATGGATTCACAAGAGGATATTAATAGAAAACCAGTTTAttgcaaatattgtaaaattccatttaactctattattagtttaaatcaGCATATGGAAAGTGAACACGAAGAAACTGCAAATAATCGGAACATGAAATTGCAGGctaataaatattcttgtaCTATTTGTGGTAAAATGTTCGCAACGGCGGGCGCGCTTAACACCCATCAAGGTTGGCATAAGCGGACGAAAATTAGTAAACCGCAAATTAAACAGGAGGTCAACGGTGATGATAGTGGAACCGAAGGGTACACGTGTACCACATGTGGCGGGGTGTTTGACGACGATACTACGCTTCAACtacatattttggaaatacacagaaaaattaacacttctattttaactgttaaatgTTCCATTTGTAATCTGGAGTTTAATTCCAGGGCTGAGGTTGAGGCTCACGAAAGGCTGCACTACAAGGAAAATAAGACTGGTGTTTTATGTAAGTATTGCAACAAGGTGTTCAGCCGCAATGACTATTTAAATATCCACATAAATAAGAAGCATCCAGAATATTCAACTGTTGGTAGTTTCGAGTGCAACCAGTGTGAGCGTGTTTTTGACAAGCAAAATGCCCTTAGCATTCATCTTAAAGTACACGAGCGCATAAATTCTGCGTCTTCATCCGCTTCTCAATCCAAACCGGGCCCTGCACAGAAATCTACAAAGGTTTATAAGTACTCATGTTCTATCTGTCATACAGGTTATGATATTCCTAAAGATTTACGTAATCACATCATTACTAACCATCCATTTTAG
- Protein Sequence
- MSGARTANYTSCCRLCLADKSTSLNSIYAGYSDAEALVEKINALIGVQITAQDKFSTMLCDRCYHMVNNWDGYKKTCLQNQTKLQEWMDNFIENGISTPIQIKEEPTDVDKDPVISLDGLEEDILVKPEPIDLVDVGDDFMDMPPPLSPHPPPLPREVQDEDTSSQEKNTNVAGVILEKRKSSLCCLVCDKVLSNISNRRKHEKVMHGLHGGKINTHDSYSTRINNLEVLEMPESENSQESQMSQQSLQSGSLASIASGPTTEQDQEKIDFAAGLRLQSKSATPKPSDLSKIEWNYIEKNRIMLTMFKRATCCCHNQNYGSWKKLLGHLRQLYSWFTPYTCYNCLVVYPGRSGKMRHQMKCPKVEYEDLIRLIEMRTRTDEKIRLYQNYKCTQCEYMYSFYADYCEHVDNEHVPEQGPYSCICMSTFDNSDEYIQHIHKSCYLNYFCDICFMLTGNLDDFKQHCEEFHDNDDGFEFMPLHPNFMVLNNMQIRRMLVSGKEKQQREQEMEKPPKQFMKRELQMIKLEQDINGEPQDIKVVNPLALPIQANKQVFTCSICQQGCSSYHNLLKHMKLYHGVETVDDNNRNTCDICGSEFSNYHNMLRHRRVHDQDMKQLQCPECPEKFRLNIELKEHLSTIHSSSRPVRLIYRCSECGESFKNTQMLEAHRQNHLYTCEECGKEFNTNNEYEQHRNSHLNITLTRDPNTMNYKSNSSPGNNMCQLCDRQFENDEDLQAHMQLHDTMPTLEMEEEEGEDFRDDELDSKMRKYACHDCNKVYSSSRGLWVHNKRYHPHRRTNKDFPKPCDECGRVITTLPAYLMHKQMHTRNALKAMNIHKHQQVKLPSSAADDSDYHTCKRCFKVFANRYNLKTHMKSHGINVSPSRAYTKGKYQKTYWCDICHQACHGLHELNRHKQEHMNEDSSHELEPKVEIVETKRPRKVFMYSMDSQEDINRKPVYCKYCKIPFNSIISLNQHMESEHEETANNRNMKLQANKYSCTICGKMFATAGALNTHQGWHKRTKISKPQIKQEVNGDDSGTEGYTCTTCGGVFDDDTTLQLHILEIHRKINTSILTVKCSICNLEFNSRAEVEAHERLHYKENKTGVLCKYCNKVFSRNDYLNIHINKKHPEYSTVGSFECNQCERVFDKQNALSIHLKVHERINSASSSASQSKPGPAQKSTKVYKYSCSICHTGYDIPKDLRNHIITNHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -