Basic Information

Gene Symbol
nfxl1
Assembly
None
Location
Scaffold5:833290-866131[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.3 1.3e+04 -3.5 1.9 14 19 152 157 152 157 0.83
2 14 0.19 1.8e+03 -0.8 0.8 4 10 188 194 187 194 0.94
3 14 2.5e-08 0.00024 21.1 16.6 1 19 202 219 202 219 0.99
4 14 6.3e-06 0.06 13.5 17.0 1 18 255 272 254 273 0.94
5 14 0.011 1.1e+02 3.1 11.8 9 18 300 309 298 310 0.90
6 14 2.1e-09 2e-05 24.6 13.1 1 18 319 336 319 337 0.98
7 14 0.61 5.8e+03 -2.5 1.1 5 10 365 370 365 370 0.94
8 14 0.00031 2.9 8.1 6.2 10 19 386 395 383 395 0.90
9 14 0.022 2.1e+02 2.1 7.9 1 11 404 413 404 414 0.95
10 14 2 1.9e+04 -4.7 6.0 14 19 483 488 483 488 0.93
11 14 0.026 2.5e+02 1.9 5.5 1 11 524 534 518 535 0.92
12 14 1.3 1.3e+04 -3.5 0.5 14 19 548 553 548 553 0.81
13 14 0.00023 2.2 8.5 16.1 1 19 562 579 562 579 0.97
14 14 3e-06 0.029 14.5 13.1 1 19 622 642 622 642 0.96

Sequence Information

Coding Sequence
TTGAAAATGGATTATCGAAATGCAGTTGCTCCTAAAAGGAGTAAAAAACATACACCAAAAAGTAATGGCCAAGGGAAAGGAGGTAAAGGATCTGGTAAATCTAAGATTCTTGCTGCCCAACATTTAGCACAAGAAAGTGCTTCATCAGAAGAAGATGAATTGGAAACTGATAATATTTTTGGGTCTCTCATTCGGGCCTACTCCCAGTTCGGAGGAAAAAATGAAGATTTGGAAAGAACTCAAAACTTTTTGGAAAATGTGTTTCAATCTGGAGCTGCAACATGTTTGATTTGCATAGAAACAGTGAAGAGAAATGATAAGATTTGGAGTTGTAATTCATGCTTTGGATTTTTCCATTTACTGTGCATTCAAAGATGGGCAAAAGATAGCATTGCACACCAGAAGTTAGCTGCTGAGGATAGACCAGGACTAAAAAATATAAATTTTCAGTGGCAATGCCCTAAATGCAGATATGATTATGAATCATCTTTCATTCCAACAATTTATTATTGCTTTTGCGGTCAAAACATAAACCCAGAGTTCCAGCCTTGGCTAGTCCCTCATTCATGTGGAGAAAAATGTAACAAAGATTTAAAACCGGAATGTGGTCACCGATGCCTTCTTCTCTGCCATCCAGGGCCTTGTCCACCATGCCCTAAAACAATAGATAACTCATGTTACTGCAGAAAGAGCGAAACTAAAAGAATGAGATGCAGTGAGAAGAATTGGTCATGTGGGGCTGTATGTAAGAAGCAATTAGCTTGTCATCAGCATTTCTGTCCAGAAAAATGCCATCCAGGGGACTGCCCTCCTTGTGGAAAAATGTCTCGTGTTACCTGTGATTGTGGGGACCAAGCAGCTCTCAAGTACTGCACACAGCTTAACTGGCAATGTGACAAGTGCTGTGATGGGAACTGTCCTCCTTGTGAAAAACCTTGTGGGAAAACTCTTAAATGTGGTCATCATAAATGTTCGTCAGTTTGTCATCGTGGTGCTTGTTATCCTTGTGCCATTGTAAAACAGTTATCTTGTAAATGCGGAGCTACCAAAATATCAATACCATGTGGTGCAGAACGATACACCAATCCTCCTAAATGTTCTAAGTTATGCCAAAATCCTCCTAATTGTGACCATCCTAAGCGATCAGACCATCGATGTCATTTTGGTGAATGTCCTCCATGCAAAATTCCTTGTGGAAAAGAGCGGACTTGTGGTCATCCATGCACTAAAGAATGTCATGCATCAGTCCTCCTAGCCAAAGAAAACTACAATCCTGCCACACCTTGGGATGTTTTTCTCACCATTTTGCTTGCATCAGTTAAAACTGTTGTGTGTTTTGTTGATTTTCCTCATATAAAGAATAGAAAATGTTTCCTAGGTGGAGTGAGGAATTTAATTCAAGGAACAAAAGTGTCCGTAAACACTCCATTTGAACTAAAAAAATTACCATGCCCAGAGTGCCCTGTGCTGGTTGATGTTCATTGCTTTGGTGATCATGAAATCATTAGTCTGCCATGCTTCAGAGCCAGACCACTTTCGTGTGGGAAGGAGTGTGGTAGGCTTCTACGATGTACTAATCATATTTGCAAAATGCTTTGTCATATTGTTGAAAATCCTCGATCGTCCAGTGAAAGTGGTTCTAATTGTGATGAATGTAGTGAAGACTGCAGTAAGGAGCGGGAATGTGGCCATCCTTGCCCAAAAGCCTGCCACCCTGATGACTGTGACCCTTGCAAACAAATCGTTAAATTAAGGTGCCACTGTACTTTGACTCAGCTGTTTGTCAGCTGTGATGAATGGACCTTAGCTGAAGATAAGACTCTTCTTCAATCCTGTGGAAATCAGTGCCCAAAGAATTATGAATGTGGTCATAGATGCACAGTTCAATGCCATAGTGGAGAATGTCCCAAGACTGTGCCTTGCCGCAAAAAGGTTAAAGTCACTTGTCCTTGCAGGAGAATAAAAAAGGACATCCAATGCCATCTCTCAGGAAAAAAACTTGACTGTGATGATACCTGCTTGAAACACAAGGAAGAAAAGCATAAGAAAGAAGAAGAGGAGCGTGAATTGGCTAGACTTGCAGAGGAACGAAGGAATCAGGAGGAGATTGAGCGCTATGAGAAGAGAATGCTGGGAGGAAAGAGAGTTCGAGATAGACGTCGTCAAACTCCTATGGATAACGAAACTTGGGTTGGCACTAACTTCTTCCTTTTTGCTGGGATTTCCTTCATCTCTGTTTCAGTTCTTTCAGTATTTTATTTTTTTACATTATAA
Protein Sequence
LKMDYRNAVAPKRSKKHTPKSNGQGKGGKGSGKSKILAAQHLAQESASSEEDELETDNIFGSLIRAYSQFGGKNEDLERTQNFLENVFQSGAATCLICIETVKRNDKIWSCNSCFGFFHLLCIQRWAKDSIAHQKLAAEDRPGLKNINFQWQCPKCRYDYESSFIPTIYYCFCGQNINPEFQPWLVPHSCGEKCNKDLKPECGHRCLLLCHPGPCPPCPKTIDNSCYCRKSETKRMRCSEKNWSCGAVCKKQLACHQHFCPEKCHPGDCPPCGKMSRVTCDCGDQAALKYCTQLNWQCDKCCDGNCPPCEKPCGKTLKCGHHKCSSVCHRGACYPCAIVKQLSCKCGATKISIPCGAERYTNPPKCSKLCQNPPNCDHPKRSDHRCHFGECPPCKIPCGKERTCGHPCTKECHASVLLAKENYNPATPWDVFLTILLASVKTVVCFVDFPHIKNRKCFLGGVRNLIQGTKVSVNTPFELKKLPCPECPVLVDVHCFGDHEIISLPCFRARPLSCGKECGRLLRCTNHICKMLCHIVENPRSSSESGSNCDECSEDCSKERECGHPCPKACHPDDCDPCKQIVKLRCHCTLTQLFVSCDEWTLAEDKTLLQSCGNQCPKNYECGHRCTVQCHSGECPKTVPCRKKVKVTCPCRRIKKDIQCHLSGKKLDCDDTCLKHKEEKHKKEEEERELARLAEERRNQEEIERYEKRMLGGKRVRDRRRQTPMDNETWVGTNFFLFAGISFISVSVLSVFYFFTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-