Ofas013445.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1119:236396-249337[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.058 3.6 8.3 7.8 1 23 111 134 111 134 0.97 2 19 0.66 41 5.0 0.3 2 23 236 258 235 258 0.91 3 19 0.17 10 6.9 0.3 1 20 264 283 264 285 0.94 4 19 0.032 2 9.1 0.3 1 23 293 316 293 316 0.95 5 19 0.0061 0.38 11.4 6.0 1 23 351 374 351 374 0.97 6 19 7.9e-06 0.00049 20.5 0.2 1 23 380 403 380 403 0.96 7 19 0.00043 0.026 15.0 0.5 1 23 409 431 409 431 0.97 8 19 2.4 1.5e+02 3.2 0.1 1 9 437 445 437 460 0.86 9 19 0.69 43 4.9 2.4 1 20 466 485 466 489 0.87 10 19 0.023 1.4 9.6 1.9 1 23 495 518 495 518 0.92 11 19 7.8e-05 0.0048 17.4 1.6 2 23 525 546 525 547 0.95 12 19 0.00017 0.01 16.3 1.6 1 23 553 576 553 576 0.97 13 19 0.15 9.5 7.0 4.4 1 23 583 606 583 606 0.95 14 19 1.4 89 3.9 1.2 1 23 612 635 612 635 0.90 15 19 1.3 82 4.0 1.7 3 23 643 664 642 664 0.95 16 19 0.0043 0.27 11.9 0.7 2 23 671 693 670 693 0.93 17 19 0.0029 0.18 12.4 2.0 2 23 700 722 699 722 0.95 18 19 0.0029 0.18 12.4 2.6 1 23 728 751 728 751 0.97 19 19 0.17 10 6.9 4.9 2 23 758 780 757 780 0.94
Sequence Information
- Coding Sequence
- ATGTTATTGTTATTTAAATATATAAAAATAGATGTATTTATTTCTTCACTGTTGTTTACACTTAGTACCTTTTCAAAGATTCCAGGTGGGCAGGTAAAATTATTTTTCCCACAAGGTTATTTCGTTTTCAGTATTAGAAATTTTCGAGGGATGGAAATGGAAGATATAAAAATAAAAATTGAAGAAGGTTTAGACTGCAATTTGCTTCATTTCATTTCCAGTTTTGGAAATGGAGACATTAAAGTTGAATATAGTAATGGAAGTATTAAAGAAGAATATGAAATGGATCTTCCTCTGGAGGATATCAATTCAGTTAGAATAAATGACTTTTTTACCTGTTACCATTGCCAAGAGTGCTGGACTAATTTAAGCCATTTAAAGTCTCACTTGAAAAAGGAACACAGTCTTTGTGAATCCACTAATAGGTACTATACATTTCACTTCAGGAAGTTAAGTATATTAAAATCTTACGGTGAAAAGAGTAAATCAAGTAGAACTATTTTAAGAAAGAAGTTATATTGCTGCAGTACATGTGCCTTTACATCTTGTTCCCTCAAGAGTATTAAAAACCACTTACTTGATTCTCATGAATTAAATTTTACAAAAAACTATGTTCTGAATAGAACTTTTGGGAACAAGCTTTTTCAAGAATGGAGTTGCTCTCCATTCATCAATGTTTCAGAAAAACTGAGTGTCATAAATCTTAATTGTCCTCATTGTGCTTATGGTACTATGGAGGCAGAATATTTGAAAAACCACATAACAGAATTTCATAGCTCAAAGAAGTCTTTTAGCTGTAATCAGTGTGGGTTTTTTTCAGGCAATATAGATGCATTGAAACAACACCTTTCTTTCTGTTTGACTGAAGAGAAGCCATATTCATGTGGTTATTGTGAATTCAGTACCTCACAAATGCCTGTGTTGAAGCGCCACATAGTTGTTAAACATGCTAGACTAAATCCTCCCTTAAATCAGTTCACTAGTTCCATTTCAACTAAAATTAACAATTTATTTTACAAAATGACTAAGGGCCATAAGAGGGGAGAATTGTTTTCTTGCACTCTTTGTAACCATACTACTGCGAACCGTGAACACTTTCGCCAGCATATAAGAAATAAGCATGTCAAGTCTAGGTCCTTTATATGTCCTGAGTGTGATTATAGCAGTTCAGGAAAAGGTAATCTTGAGCGTCATATTAGATATAAGCATACTAAAGAAAAGCCATTTGCCTGTCAGCAGTGTGACTATGTTGCAGCTTTTTCTAATCAGTTAGAGAGACACCAGAGAAAGCATAGGAATCAAGAACATTTTGTGTGTCCTATTTGTGACTATCGAACACTACAACTTCTGGTAATTAAGCGTCATGTTTTTAGGGAACATATCCACACAGAGGAATTTTCATGTAAAGACTGTGACTACAAGACTTTAAAGTTTTCTGAATTAAGGAAGCATAGTGCCTTTCAACACGCAGAAGAAAAGTTATTCCACTGTCCCAATTGTGACTATAAAACTCTTCGTAAAGAACATCTGAATACCCACATAGCTGCTATCCATACCAAAGAGAGAAACAGATCTTGCCCTCATTGTCCATTTGTAACAGTTCAATCATCCAACCTATTATCTCATATAAAGGTGCATCATATGAAAGAAAAAGCTTTCAAATGTTCACAGTGTGATTATTCTGCTAGTTTCCAATATCAACTTAATAAACATATTAGTGTTAAACATTCTGAAGAACAACAGAGGTACAAATGTCCACATTGTCCTTTCCTTTCCAATTACAAGAACAATATGAAAACACATATTGCACACAAACATACTGCAGAGCGTCCCTATTCATGTCCATCATGTAGTTACAGTTGTGTTGCATCTACTGACCTCAAATTTCATATATTAGCTAAGCACTTAAAAGCTAGACCACTACTTTGCCCTCACTGCAGTTATGGTACCCTCCGAAAAGATCGTTTAAGACAACATATTGACTCCAAACATACTCATAAAAAAGCTTTGGAGTGCCCCCATTGTGATTACAGATCTGTGCTTCGTGCTAGTTTAAGACGTCATCTAGTTTCAAAACATAACATAGGAAATCATTTGTCTTGTTTTGAATGTGGATTTAAAACTGTCTATAGGCATAATCTAAAGGAACACATGGTAACTCAACATACCAAAGAAAAGAATTTTGCTTGTAAATTTTGTGATTATCGATGTGCTGTACGAAAATCACTAAAAGTGCATATTTTAACAAAACATAGCAAGAATAAATCCAAGACTTGTCATTTTTGCTCTTTTGTTGCTGCTCACTCCAGTTTATTGAAGAAGCATTTAAAATTCAACCATAATTTGTCATAA
- Protein Sequence
- MLLLFKYIKIDVFISSLLFTLSTFSKIPGGQVKLFFPQGYFVFSIRNFRGMEMEDIKIKIEEGLDCNLLHFISSFGNGDIKVEYSNGSIKEEYEMDLPLEDINSVRINDFFTCYHCQECWTNLSHLKSHLKKEHSLCESTNRYYTFHFRKLSILKSYGEKSKSSRTILRKKLYCCSTCAFTSCSLKSIKNHLLDSHELNFTKNYVLNRTFGNKLFQEWSCSPFINVSEKLSVINLNCPHCAYGTMEAEYLKNHITEFHSSKKSFSCNQCGFFSGNIDALKQHLSFCLTEEKPYSCGYCEFSTSQMPVLKRHIVVKHARLNPPLNQFTSSISTKINNLFYKMTKGHKRGELFSCTLCNHTTANREHFRQHIRNKHVKSRSFICPECDYSSSGKGNLERHIRYKHTKEKPFACQQCDYVAAFSNQLERHQRKHRNQEHFVCPICDYRTLQLLVIKRHVFREHIHTEEFSCKDCDYKTLKFSELRKHSAFQHAEEKLFHCPNCDYKTLRKEHLNTHIAAIHTKERNRSCPHCPFVTVQSSNLLSHIKVHHMKEKAFKCSQCDYSASFQYQLNKHISVKHSEEQQRYKCPHCPFLSNYKNNMKTHIAHKHTAERPYSCPSCSYSCVASTDLKFHILAKHLKARPLLCPHCSYGTLRKDRLRQHIDSKHTHKKALECPHCDYRSVLRASLRRHLVSKHNIGNHLSCFECGFKTVYRHNLKEHMVTQHTKEKNFACKFCDYRCAVRKSLKVHILTKHSKNKSKTCHFCSFVAAHSSLLKKHLKFNHNLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -