Ofas004644.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold3229:15513-23585[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.41 25 5.6 0.7 1 20 76 96 76 100 0.69 2 15 0.028 1.7 9.3 4.0 1 23 156 179 156 179 0.97 3 15 2.1 1.3e+02 3.4 2.6 1 23 185 208 185 208 0.92 4 15 0.0012 0.077 13.6 0.8 1 21 214 234 214 237 0.96 5 15 9.4 5.8e+02 1.4 0.2 1 23 243 266 243 266 0.86 6 15 0.0073 0.45 11.2 2.0 1 23 294 317 294 317 0.95 7 15 0.0053 0.33 11.6 2.3 1 23 323 346 323 346 0.97 8 15 0.0036 0.22 12.1 1.9 1 23 352 375 352 375 0.97 9 15 0.011 0.71 10.5 2.9 1 23 381 404 381 404 0.97 10 15 0.00087 0.054 14.1 1.1 1 23 410 433 410 433 0.97 11 15 0.003 0.18 12.4 1.0 1 23 439 462 439 462 0.97 12 15 0.00039 0.024 15.1 0.9 1 23 468 491 468 491 0.97 13 15 0.0018 0.11 13.1 0.4 1 23 497 520 497 520 0.97 14 15 0.0013 0.078 13.5 0.7 1 23 526 549 526 549 0.97 15 15 1.6e-05 0.001 19.5 0.8 1 23 555 578 555 578 0.98
Sequence Information
- Coding Sequence
- ATGTGTTCATCCTCTAAAGGCATGGAAAATTATTTTTCCCCATCAGATTCCCCTCCATTCAGTACACTCGAAGAAGACCCTTGCTCGTCAACTTCAACGATGCCACACCTGACTAAAGAAGAACCACCCATGGAAATCCCCTTCGAAGTAAATTTATATAAGTCAGAGGACGAGTTTGGTGACAGTGAAAAGGAGTCATTTTCACACTCTTCACATCTTCCTGTATTTGAGTGTCACCATTGCGGCTTGGTTTCTGTTGGTAATAAGAAAGCTATCAGAAAACACATAGTTCAGGAGCATGCAGAAGTTTTTATTCTTGTTGGAAAGACTTCGCCAAGTTTATCTGAGGGGATTATTAAACTCTATGAACATAGGACATGTTTCCCTTCAAACTGTGAATATAAGTCAGCTAATTCTCTCAACCTAATGGAAGACACAGTGTCTAAACACATCAAGCAACGATCTTTTTCTTGCCTGTTCTGTGACTTTCACACCGCATATTCTAGGAACTTGAAGAGCCATGTAAGGTCCAAACATGCGGATGAACGGCCCTTTTCCTGTCCTCACTGTGAGTTTCAGACACAAAATTATACCATCTTGAGAAGACATGTAATGAATAAGCATACCCAGGGAAAGCGATATTCCTGCCCTGACTGTGAGTTTATGACAGCGTATTCTGGTGCCCTGAAGAAGCACATTAGGTGTGTACATAACGGTGACCGTACTTATTCCTGTTCATTTTGTGAGTTTAAATCAGTTCTACCTGGCCTCATGGGGAAACATGTTATATCGAAACATAACCAGCCTTATTTTGACTATGTGGCAAATTCTGGGGCCTTGAAGAGATTCATAATGAATAACAATACTGGCAAAAGCCTTTATTCATGTACTTATTGTGATTATAAGACACTAAATGCTGGCCATTTAAAAAATCATCTTATATCAAGACATACCAGTGACCGACCGTATTCCTGCTCTCACTGTGAGTATGAGACAGCGTTTTCTGAAAGCATGAAGAGACACATTATGTCTAAGCATACCGGGGAAAGGCCATATTCCTGCTCTCAATGCGAGTATAAATCAGTACACTCAGGTACCTTGAAGCAACACATTATATCTAAACATACAAGCGAACGGCCTTATTGCTGCCCACACTGTGAGTATCAAACAGCGCTTTCTGGCACCTTGAGGAGACATGTAATGATGAAACATACCGGGGAAAGACCATATTCCTGCCCTCATTGTGAGTATAGATCAGTTCAGCCTAGTTATGTAAAGATGCACATCATGTCTAAACATGCCGGTGAACGGCCTTATTCTTGCTCACAATGTGAGTATCAGACAGCACTCTCAAGCAGCTTGAAGAGACACGTAATGTCTAAGCATACCGGTGAACGACCTTATTCCTGCCCTCAATGCGAGTATAAATCAGTCCACAATGGTGCCTTGAAGAAACATATTATATCGAAACATACAAGTGAACGGTCTTATTCCTGCCCTCAATGTGAGTATCAGACAGCGCTTTCTGGTACCTTGAGAAGACATTTAATGATGAAACATACCGGGGAAAAGCCGTATTCCTGTCCTCACTGTGAGTATAGATCAGTTCAGTCTGGTCCTTTAAAGATGCACATCATGTCTAAACATACCGGTGAACGGCCTTATTCCTGTCCTTATTGTGATTATAGGTCAGTAAGGCTTAGAGATTTAAAAGTACACATAAAAACGAAGCATTAG
- Protein Sequence
- MCSSSKGMENYFSPSDSPPFSTLEEDPCSSTSTMPHLTKEEPPMEIPFEVNLYKSEDEFGDSEKESFSHSSHLPVFECHHCGLVSVGNKKAIRKHIVQEHAEVFILVGKTSPSLSEGIIKLYEHRTCFPSNCEYKSANSLNLMEDTVSKHIKQRSFSCLFCDFHTAYSRNLKSHVRSKHADERPFSCPHCEFQTQNYTILRRHVMNKHTQGKRYSCPDCEFMTAYSGALKKHIRCVHNGDRTYSCSFCEFKSVLPGLMGKHVISKHNQPYFDYVANSGALKRFIMNNNTGKSLYSCTYCDYKTLNAGHLKNHLISRHTSDRPYSCSHCEYETAFSESMKRHIMSKHTGERPYSCSQCEYKSVHSGTLKQHIISKHTSERPYCCPHCEYQTALSGTLRRHVMMKHTGERPYSCPHCEYRSVQPSYVKMHIMSKHAGERPYSCSQCEYQTALSSSLKRHVMSKHTGERPYSCPQCEYKSVHNGALKKHIISKHTSERSYSCPQCEYQTALSGTLRRHLMMKHTGEKPYSCPHCEYRSVQSGPLKMHIMSKHTGERPYSCPYCDYRSVRLRDLKVHIKTKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -