Basic Information

Insect: Oncopeltus fasciatus
Gene Symbol: Clamp
Assembly: None
Location: Scaffold1221:292774-296914[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.1e-06 0.00025 21.4 2.1 1 23 219 241 219 241 0.99

2 8 0.00031 0.019 15.5 0.3 1 23 256 279 256 279 0.95

3 8 4.3e-05 0.0026 18.2 2.5 1 23 376 398 376 398 0.98

4 8 3.6e-06 0.00022 21.6 0.4 1 23 404 426 404 426 0.98

5 8 2.3e-06 0.00014 22.2 0.8 1 23 432 454 432 454 0.98

6 8 4.1e-07 2.5e-05 24.5 1.8 1 23 460 482 460 482 0.99

7 8 8.5e-06 0.00053 20.4 1.0 1 23 488 510 488 510 0.98

8 8 0.0002 0.012 16.1 0.7 1 23 516 538 516 538 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.1e-06	0.00025	21.4	2.1	1	23	219	241	219	241	0.99
2	8	0.00031	0.019	15.5	0.3	1	23	256	279	256	279	0.95
3	8	4.3e-05	0.0026	18.2	2.5	1	23	376	398	376	398	0.98
4	8	3.6e-06	0.00022	21.6	0.4	1	23	404	426	404	426	0.98
5	8	2.3e-06	0.00014	22.2	0.8	1	23	432	454	432	454	0.98
6	8	4.1e-07	2.5e-05	24.5	1.8	1	23	460	482	460	482	0.99
7	8	8.5e-06	0.00053	20.4	1.0	1	23	488	510	488	510	0.98
8	8	0.0002	0.012	16.1	0.7	1	23	516	538	516	538	0.96

Sequence Information

Coding Sequence: ATGGAAATTATTATCCATGGGAGCGTTACTACATTAATAAATAGAGGAGCTCCAATAAATTATATTTCATCTGGTATCACAGAAAAAGAAAAGGCCCATGCTGAGAATATGTCATTAGATTCTAATAATTGGGTGAACAGAGAACAGAACAAACTACCTGATCCTAAAAAAATATACAGTAACGAAACTCAACAGGTCAGGGGACAAAAAATTCCTGTAAAACAATTTGTTGATCCAGCAGAGAGTGTAAATAGGTTCACTCAGACTGAGCAACTGGGTCTATACCGAGGAAATTGCATTGATAATGGGAAGGAAGTTATGTTTGACTCAAATATTCAGCAACAACATCAACAACAACAACAGCAGCAGCAGCAGCAGCAACCGCCACCGCAAGGACAGCAACATCATGTAACACAGTTGTATACTCTTGAGAAGAAAGACGATAAGCAGCCTTCGGTAGCAGACTTTCCTTTTTGCTATAATGTTAACATGTTACAAAAAGTTAATCAACAATCAACTAACTCTAATAACATTGGTGTCGGAAATAATCCTGCAGATGACAAGAATTATAGGTTTGACGTTACTCAACCCTTTTCATATAATTATGCTCTTGTTAATCAGATGTCATTGGCTGCTGCTGCTTCTACGGCTACATTTAAATGTGATGTATGTGGCCTTGTTTTTGCTCATCTCTCTCTTTTAAACCATCATAAACGAATACACACTAATTCTAATAATAGCAATTCTAATTCTAATGAGCGAATTTTTTCATGTGATACTTGTGGCAATACCTATAATTCTGCTGCTGACCTCAAAAATCATAAGCAGAATGCTCATAGTAATCAATCAAAATCAAAATGCTGTTCCTCGTGTGGTGTAGAAGTTGACTGTGACCATCCATCAAAGAAGAAGAATAAGAATGTGCGGTGTGAAAATTGTTCCGAGAGCCCTGAAAGGGATTCCAGTTATGAGGGAACTCAAGAAGCTGCAACTGAAACTGAAGTCATACCTAAGGGTATGCATCCTGTTAAAAGGAGAGGTATGGCAACTATAACTAAGTGCCATAAATGTAATGGCTCAGGAATAATTTTTGTTGGAGGGGTTCAAAATCAAGTTGAAAAACCTTATCATTGTAATATTTGTGATGGGACTTTTTCTCGTTATTCATCACTTTGGAGCCATAAGAGGCTCCATTCAGGGGACAAACCATTTAAATGTGATTTCTGTGGTATAACCTTTGCTCGAGCTGCTTATTTAAAAAATCACTCCAGAGTTCATAGTGGTGAAAGACCTTTCAAATGTGATGTTTGTGGAATGCAGTTTTCTCAGGCTCCACATTTGAAGAATCATGAAAGGATTCACTCAGGTGAACGGCCATATGAATGTGAAGTTTGTAACAAAACTTTTGCCCGTCATTCTACATTATGGAATCATAGAAGGATTCACACAGGAGAGAAGCCTTATCGTTGTAGTATTTGTGGCTCTGCATTTAATCAGGCAACCCATTTAAAAAATCATGCTAAGGTCCACACTGGTGAGAAACCACATAGGTGTGATATTTGTGAGGTGGGATTTTCTGACAGGTTTGCCTTGAAAAGGCATAGAGGAATTCATGAAAAGTATGGCCAAACAGCTGCAAATAGGCAGGGCCAGACTCAGACAATGGGGGATATGTATGGGAAGTGCGAAGTTGAAAGTGACTCTTTAAAACAAAATCAAGGTCAGCAAACTCCAACATCTCAGCCTAGGCTGGATGAACTATATAAATGTGATGTTACTGGAGGTATAGCTTTTCCTGGATGCTCGCGGCCTCAAGAAGCTAAGTAG
Protein Sequence: MEIIIHGSVTTLINRGAPINYISSGITEKEKAHAENMSLDSNNWVNREQNKLPDPKKIYSNETQQVRGQKIPVKQFVDPAESVNRFTQTEQLGLYRGNCIDNGKEVMFDSNIQQQHQQQQQQQQQQQPPPQGQQHHVTQLYTLEKKDDKQPSVADFPFCYNVNMLQKVNQQSTNSNNIGVGNNPADDKNYRFDVTQPFSYNYALVNQMSLAAAASTATFKCDVCGLVFAHLSLLNHHKRIHTNSNNSNSNSNERIFSCDTCGNTYNSAADLKNHKQNAHSNQSKSKCCSSCGVEVDCDHPSKKKNKNVRCENCSESPERDSSYEGTQEAATETEVIPKGMHPVKRRGMATITKCHKCNGSGIIFVGGVQNQVEKPYHCNICDGTFSRYSSLWSHKRLHSGDKPFKCDFCGITFARAAYLKNHSRVHSGERPFKCDVCGMQFSQAPHLKNHERIHSGERPYECEVCNKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVHTGEKPHRCDICEVGFSDRFALKRHRGIHEKYGQTAANRQGQTQTMGDMYGKCEVESDSLKQNQGQQTPTSQPRLDELYKCDVTGGIAFPGCSRPQEAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01309665;
90% Identity: -
80% Identity: -