Ofas003344.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- L
- Assembly
- None
- Location
- Scaffold125:673444-697117[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.6e-06 0.00047 20.5 1.1 1 23 139 161 139 161 0.98 2 20 0.82 51 4.7 5.4 1 23 167 189 167 189 0.97 3 20 3.3e-06 0.0002 21.7 2.0 1 23 195 217 195 217 0.99 4 20 1.8e-05 0.0011 19.4 0.4 1 23 223 245 223 245 0.98 5 20 0.0062 0.39 11.4 0.4 2 21 260 279 259 283 0.90 6 20 3.2 2e+02 2.9 1.8 3 21 305 324 303 325 0.82 7 20 0.0018 0.11 13.1 0.2 3 23 353 374 352 374 0.95 8 20 0.13 8 7.2 0.5 2 23 386 408 385 408 0.91 9 20 0.34 21 5.9 0.1 3 23 499 519 498 519 0.96 10 20 0.0016 0.098 13.2 0.1 1 23 527 550 527 550 0.95 11 20 1.4 88 3.9 1.1 2 23 556 578 555 578 0.89 12 20 0.0025 0.15 12.6 3.2 2 23 625 646 624 646 0.96 13 20 0.17 11 6.8 1.9 1 23 656 678 656 678 0.97 14 20 0.0075 0.47 11.1 1.5 2 23 686 707 685 707 0.96 15 20 4.6 2.8e+02 2.3 0.2 2 23 723 744 722 744 0.93 16 20 0.0016 0.1 13.2 0.5 2 23 781 803 780 803 0.94 17 20 0.041 2.5 8.8 0.4 2 20 807 825 806 827 0.92 18 20 0.0011 0.069 13.7 0.0 2 23 838 859 837 859 0.95 19 20 0.00039 0.024 15.2 0.0 1 23 867 889 867 889 0.97 20 20 0.28 17 6.2 1.6 3 23 898 918 896 918 0.93
Sequence Information
- Coding Sequence
- ATGTGCGTTAAGGAATTTGTGGCTGTTTCTTCCAAACTTATTGAAGAGTTCCGGCCATTTCTGTATGGAATAGCCCCGACTGTCTGTATCCTCGAGGATTGGCTTCACGCTGCAGATCTCTGTCTCGCGATACAGACTCCTTGTTCTTCCTTTCTGCGGTTTGCTGTCTATGAAATAGTCCGGACTGTCTGTATCCTCGAGGATTGGCTTCACGCTACAGATCTCTGTCTCGCGATACAGATTCCTTGCTCTCCCTTTCTGCGGTTTGCTGTCTATGGAATAGCCCCGACTTGTATTATAAGGTTCAGAAGTTTCAGTGCCACGGAAGAAGGAGAAACAAGTGCATCTGAAACCACCTCAGAAGCTGTTGATTCAGATCTTGGCTATAGTTTTGGGGTAACTGATTCCACTCCATATCAGTGTCAGTTTTGTGACAAAGCATTTCCTCGATTGGGTTATTTAAAGAAGCATGAGCAGAGTCACATTGACCAGATGCCTTTCAGTTGTGAATTTTGTAGTAGGCTTTTTAAGCATAAGAGGAGCAGAGATCGCCATGTTAAATTACACACTGGAGATAAAAAATATCGCTGTTCTCAGTGTGTTGCAGCATTTTCAAGAAGTGACCATTTAAAAATTCACATGAAGACTCATGATAACCAAAAACCTTATCAATGTAATTATTGCAATCGAGGGTACAATACAGCTGCAGCTTTGACTTCACATCTGCAAAACCATAAAAGGGATATTATTACAAGGAATTCTGAAAATAATAAATTACGTTGTCAAGAGTGCAACTTATTTTTCTCTAACCAAGAAGAATATTCGATTCACTTAGCAAATAAAGACCATCAATCAGAAGCATCATCCAAAACATCATCATCTTCACGGACTAATGATGAATGTATAATTGATTGTAAATATTGCAAGAAATGCAATTTTTCTTCTCATGAAGAAATGATGACCCATATCCAAGTTTGTCAAGAAAATTCTCACAAGAATGTTGAAAAAAGTAGTAGAGAATATTCTCATGGAAGTTCAATTTTTGGGGAAAACCCTTGTCCTATTTGTTTTACAACTTTCTCATCTATAAAATCATTAAGCATGCACATATCTGTGTCACATGGAATGAGTAAGCTATCTATTGAGTCTGAATTGTCATGTAGGAAGTGTTTAATAACTTTCACAAATACCAGTTCAATGATTGAACATTGGATATATTTTCATGGCATAAATAATCCTACCCTCCCTCTAGCTCACTCAGATCAAACTAAGCCTACTGATTTAAGTATGGTTAGAAAAGCAAAAGATGATGATCTACCGCTTAAGAAAAAATCAAAATTAAAGGAAGCAGAATCAACTGTTGCTACTCAGGTAATCAACTTTCTTATTTCAGCACTACCTGATTTCGAATCATTTAGAACACATCTGAAGTCTCATTTAGAAGAATCTTCACAATGTTCAAAGTCATCTCCAAATAAAATACTTTATGGAATGTGTTCTTATTGTAGAATACCAATTTCTTCACTTCAAGAAATGATTAAGCATATTGGTACTCACATTCTTACAACTGTTACTGAATATTCCTGTAATATTTGCCAAAAGATATTTTTAACTTCACCAGAACTTGAACAACATTTAATGGAAGTTCATTCACATCACTTATTCCTTTGTTATGCTTGCAAAGAAGTATTTGATACAAGGTTTGGGATACAGAGACATTTTACTATGAAACATCTTAATGAGACCACTAAGTATACATGTAGAATATGTCAAAATTCTCCTCCATTAAATACAGAATCTGAATTTGAACATCATGTTAAAAATTTCCACTGCGGATTTGATCCCTCTTTATCATTACAAGATGTCAGTTTGCATTGCGCATACTGCAGCGAAGTATGTAAATCCAGAAATGATCTAGAAAACCACATGAAACTTCATTGTCAAAGTTCTCATAGCTTTGGAAAACATAAATGCAATATTTGTGATGAGCTATGTCTTACAGCATCAACATTAGCTGAACATAAACTGACGCACTGTAAGGTTATCTATGGTTCAACATGTTCACATTGCAAAGCATCTATTACAACTGAAGATAATTTCCTAAATCATATGATTAATCACAACAATGGTCTTTCTTCAAAAGCTTTTCAGCTCACACTTCCTGTATCCTGTGTTATATGTCGACAAACTTTAGTTTCTGAATCTGAAACAAGACTTCATGCAAAATTTCATTTGCAAATTGAAACAAGTCAATGTTCAATGTGCCTTCAGGTTTTTAATAAATGTGATATAAAAGGAAATATTTGTGTAAAGTGTCTGGAAGAACAAAATTCCCCAAAACGATGTCCTCATTGTGAACGAATAGTTTCAACATTCTCTGAGCTGGAAAGTCATATTTCTGAAGAACATAAGATGTTGCAGTGCAAGAATTGCAAGGCATTTTTTACTTCTAAAGATGAATATGACCTGCACCTAGAAAGCCCTTGCTCACCTGTCTCTTTCCAAGGATTAAAATGCAATATATGTGTCATGATATTTCCCAATCAAGCTAAGCTGCAGGCTCATTTGATCGAACATACCTTTATAGGGTGTGCAAATTTCACTTGCTACATTTGTGGTGCTGTATTTACTGTTGCTTTAGGACTTCAAAGACACATTTCTGAGCATGGAAATTCTTTAAAGCCATATGGTTGTACAAAATGTAATATGAAGTTCTTCTTTAGGGCAGAGCTAGATAATCACTTATTTTTTCATCAGATGAACATTTCTCAGCCTAGAAGAGATTTTTCAGAAGTCAATGATCAAGCTGCAAAAAATAAACCTCTAGAACTAGTGCAGAAAGCAACAGAGGATAATAACAACAATTCAAATCCAATGGAAGAATGCCAGGAAAAAGTGAAGTGA
- Protein Sequence
- MCVKEFVAVSSKLIEEFRPFLYGIAPTVCILEDWLHAADLCLAIQTPCSSFLRFAVYEIVRTVCILEDWLHATDLCLAIQIPCSPFLRFAVYGIAPTCIIRFRSFSATEEGETSASETTSEAVDSDLGYSFGVTDSTPYQCQFCDKAFPRLGYLKKHEQSHIDQMPFSCEFCSRLFKHKRSRDRHVKLHTGDKKYRCSQCVAAFSRSDHLKIHMKTHDNQKPYQCNYCNRGYNTAAALTSHLQNHKRDIITRNSENNKLRCQECNLFFSNQEEYSIHLANKDHQSEASSKTSSSSRTNDECIIDCKYCKKCNFSSHEEMMTHIQVCQENSHKNVEKSSREYSHGSSIFGENPCPICFTTFSSIKSLSMHISVSHGMSKLSIESELSCRKCLITFTNTSSMIEHWIYFHGINNPTLPLAHSDQTKPTDLSMVRKAKDDDLPLKKKSKLKEAESTVATQVINFLISALPDFESFRTHLKSHLEESSQCSKSSPNKILYGMCSYCRIPISSLQEMIKHIGTHILTTVTEYSCNICQKIFLTSPELEQHLMEVHSHHLFLCYACKEVFDTRFGIQRHFTMKHLNETTKYTCRICQNSPPLNTESEFEHHVKNFHCGFDPSLSLQDVSLHCAYCSEVCKSRNDLENHMKLHCQSSHSFGKHKCNICDELCLTASTLAEHKLTHCKVIYGSTCSHCKASITTEDNFLNHMINHNNGLSSKAFQLTLPVSCVICRQTLVSESETRLHAKFHLQIETSQCSMCLQVFNKCDIKGNICVKCLEEQNSPKRCPHCERIVSTFSELESHISEEHKMLQCKNCKAFFTSKDEYDLHLESPCSPVSFQGLKCNICVMIFPNQAKLQAHLIEHTFIGCANFTCYICGAVFTVALGLQRHISEHGNSLKPYGCTKCNMKFFFRAELDNHLFFHQMNISQPRRDFSEVNDQAAKNKPLELVQKATEDNNNNSNPMEECQEKVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -