Ofas008904.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold50:696217-708675[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.3e-05 0.0039 17.6 0.9 1 23 142 165 142 165 0.97 2 17 7.2e-06 0.00044 20.6 1.3 2 23 170 192 170 192 0.97 3 17 0.88 54 4.6 0.2 2 19 350 366 349 366 0.92 4 17 0.14 8.6 7.1 0.2 2 20 395 413 394 418 0.91 5 17 0.0019 0.12 13.0 0.1 2 21 495 514 494 515 0.94 6 17 0.00073 0.045 14.3 0.3 2 21 518 537 517 541 0.89 7 17 0.00031 0.019 15.5 4.2 1 23 563 585 563 585 0.98 8 17 2.9 1.8e+02 2.9 0.1 3 23 594 615 592 615 0.91 9 17 0.025 1.5 9.5 1.9 1 23 620 642 620 642 0.95 10 17 0.019 1.1 9.9 1.2 2 23 650 672 649 673 0.93 11 17 0.00096 0.06 13.9 0.1 2 23 676 697 675 697 0.96 12 17 3.6e-05 0.0022 18.4 0.8 2 23 704 725 703 725 0.95 13 17 0.0073 0.45 11.1 1.2 1 23 732 754 732 754 0.98 14 17 0.0033 0.21 12.2 2.7 1 23 760 782 760 782 0.99 15 17 9.1e-07 5.6e-05 23.4 0.7 1 23 786 808 786 808 0.98 16 17 3.7e-06 0.00023 21.5 1.7 1 23 814 836 814 836 0.98 17 17 0.063 3.9 8.2 3.4 1 23 842 865 842 865 0.96
Sequence Information
- Coding Sequence
- ATGAAGGTATCTGAGTGTTTTGTCTGCTCCGAAAAGGCCAGTGATGGAGGGCTTTCCCTCATTCAGTGTCAGACTGCCTTCTCTCGCATTACTCTTGGTGAGAAGTTACAAGAAGTTCTAGGTTCCAAATATCTCGTACTCATATCAGCAAAGGACTCTATTTGCTGGGATTGTGCTATGTTCTTGAATTGGATTGATAGATTTGAGCACAAAATTGAATTGATGAAAGAGCATTTCTATGACATGATTCATTCTAAGTATAAAAGGAAAGAAGTGAAACTTCAAGATGAAGATGATATGTTATTTGAATTGCCAACTCTACCAGAGGCTGCATCACCTGTTCCTGTGACTCCCCCCCCTGTCAAGCACGTGCAATTCCAGACCATAAAAGAAGAAAGTGGTCGAGGCCGGCGAAGGAAGGAGTACAGCTGCAAGTACTGTGGGAAGGAGTATGTAAGCTTGGTTTCGCTAACAATGCACACCCAAAGAACCCATGCTCCAGGTGAGCGATGTGAAAAATGTGATGCTACTTTTGTTAGCAAGTCTCGCTTACGTCGGCATCTTCGCACAGCGCACCCAATACCTGGAAAAGAGCTTACCTGTGTCTCATGTGGCTTCCGAACAACTAATACTGAGGTTTACTGTCGACATGTCTGCAACTCATCTATTGTATCTCTTAGTTGTGTCTCCTGTCATAAGAGGTATGTTGATTCCAACTTCCGAGACATGAAGGGTGCTTATAAGTGTCAAGCATGCCAGCGAGAAGAGGGTGGAGAGGAACCTGATCTTGAGGATACCTCTAAGGAGAATACTGTTAATCCAGTCAACATAAAGGGGTCAGACAAAGGAGATAATTCATTTCCAGAAGAAGTTGAGGAAGCAGTAGAAGAGCATGTAGAAGCAATTCCCTCACCCACTTCTCCTGTTGAAGAACCGGGAGAAATAGGAGCTTCTGAACTTGTGTCAGAAATGCCAGAATTCTTTAAAGAGCCAGAGTTGACTGAGCATGAGAGGATGCTGAAGAAAGATGAGCAAGACTCCTTCATCCGGTGTGAAGGATGCTCTGAACAGTTCAGACTACGTGATCTCACTCAACACCCCTGCTTCATTAGAGGAGATGCAGTTGAGTTTATTGAAGTAGAACCTCCACCTCCAGAGGTTAGGGACCAACAACCACTCCTCACCTGTAAGGCATGTGATTTTCAATTTTCCAGTATTGAGACTTTGCGAACTCATTGGGATGAGACAGGTCATCTCCGGGAGGTGAATACTCCTGTTGTTGAAATCAATAAAATAAAAGATAAATACAAGAAAACAGAAGCAACTTTCAAGGTAGTGAAGCAAAACTTCTGCATACGGGCCTTAATCCCTGGTCAAAATGAGGAGGCTCTCCGTGCAAGTGATGACTATAAGGACATTTTTATCAGGGTTAGTGACAACAAGATTGATCCCATTGAAGACTTTTTGAAGAAAGATGGAGACAGTTGTGGGACTTGTGGGTTGAACTTTTCTTCTTCTGACCTTCTAGCTACGCATCAGCAGGAGTGTCTCACTTGTGTAGGTTGTGGAGTGAGTTTCTATGATAACAAACTCTTGAAAAAGCACTATTTATACACAGGGCATGCTAGTAAGCTCCGCACTCCAGACTCCTTGCCTTCTCCTCAACCTCTCAGTGATTCTTTTGGCTTTAAGTGCCACCTTTGCGTAAAAAGCTTTCCTTCTAGATTCCTTTTACGAAAACATTTTCAAGTCCATTATAAAGGCACTGAAAAGGATGCTTGCCAATTCTGTCTTGCTGAATTTGACAATAAAAATGACATTCAGCAGCATGTTCTTGAGGTCCATGGAGCTCATTTATATAAGTGTAGTTACTGTGAAAGGACCTTTATGTCTGAAGTATTCAGAAATAGACATGAAGCCAAACATAAAAATCCTAAGGTTCCAATTGAGTGTTTTGTTTGTAATTTAAAGTTCCCTAATCAGAAGTCTTTATTATTGCACAATGAGACATATCACCATGGATCCAGTTGCAGACTATGTGGTAAAATAGTAGAAGATCCTGTTGCACTTAGAAGACATGAAAGGAGACACTATTTTGATAAAGAACTTGAGTGCAATATATGCAAAAAACGTTTCAGAAGTAAAGCAATGCTTATAGCACACTCAAAAAACCACTCAACAGATGAAGTGAAATTCCGATGCGATATTTGCCACTTGGGGTTTTTGTCTGAGGAATCCCTGAAAGAGCATCGATTAACTCATATGACTAAGAGTAAGTACAAATGTGCTCGCTGTAATCTGATTTTCTCTAGCAGAGCTCACTATTGGATGCATTCGAAAACCCATGATATCTCCTATCCATGCAGTGTTTGTAACCGTACATTTAGGGATAGCTCTATGTTAGCTATTCACAGACGTAAACACTGGCGTGTGCGACCTTACCAATGTCCTCAGTGTCATAGAGTATTTTCTGTCTCATCTACATTACTTCGACACTTATTCGTTCACAGTCGTCAGTACCCCCATAGATGTGGCATCTGTAAAAAAGGTTTCCTCACAAGGCATGCCTATCTCCGTCATACAGAGACAATTCATGCAGTTTCAAATAGTTTTCAGCCAGCCCACCCGAGAACCAATATCCATACTCTCCCTCTGAATGCCACTGATGAAGATATATTCCAAGCTGCTGACACTCTTATTGCTGATGACTCAATTATGTTTAATGAATTTCAGAACAAAGATATGGAGCAACCTTCTTCAACAGACCTTATTACTAATGAAGTTGTTGTTGAAACTACTGAGCTCTTTGATGAAATTTTACACTGA
- Protein Sequence
- MKVSECFVCSEKASDGGLSLIQCQTAFSRITLGEKLQEVLGSKYLVLISAKDSICWDCAMFLNWIDRFEHKIELMKEHFYDMIHSKYKRKEVKLQDEDDMLFELPTLPEAASPVPVTPPPVKHVQFQTIKEESGRGRRRKEYSCKYCGKEYVSLVSLTMHTQRTHAPGERCEKCDATFVSKSRLRRHLRTAHPIPGKELTCVSCGFRTTNTEVYCRHVCNSSIVSLSCVSCHKRYVDSNFRDMKGAYKCQACQREEGGEEPDLEDTSKENTVNPVNIKGSDKGDNSFPEEVEEAVEEHVEAIPSPTSPVEEPGEIGASELVSEMPEFFKEPELTEHERMLKKDEQDSFIRCEGCSEQFRLRDLTQHPCFIRGDAVEFIEVEPPPPEVRDQQPLLTCKACDFQFSSIETLRTHWDETGHLREVNTPVVEINKIKDKYKKTEATFKVVKQNFCIRALIPGQNEEALRASDDYKDIFIRVSDNKIDPIEDFLKKDGDSCGTCGLNFSSSDLLATHQQECLTCVGCGVSFYDNKLLKKHYLYTGHASKLRTPDSLPSPQPLSDSFGFKCHLCVKSFPSRFLLRKHFQVHYKGTEKDACQFCLAEFDNKNDIQQHVLEVHGAHLYKCSYCERTFMSEVFRNRHEAKHKNPKVPIECFVCNLKFPNQKSLLLHNETYHHGSSCRLCGKIVEDPVALRRHERRHYFDKELECNICKKRFRSKAMLIAHSKNHSTDEVKFRCDICHLGFLSEESLKEHRLTHMTKSKYKCARCNLIFSSRAHYWMHSKTHDISYPCSVCNRTFRDSSMLAIHRRKHWRVRPYQCPQCHRVFSVSSTLLRHLFVHSRQYPHRCGICKKGFLTRHAYLRHTETIHAVSNSFQPAHPRTNIHTLPLNATDEDIFQAADTLIADDSIMFNEFQNKDMEQPSSTDLITNEVVVETTELFDEILH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -