Ofas011821.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1783:200973-209229[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.11 6.8 7.5 2.3 1 23 44 67 44 67 0.96 2 17 0.14 9 7.1 1.8 1 23 72 95 72 95 0.94 3 17 6.6e-05 0.0041 17.6 1.8 1 23 101 124 101 124 0.98 4 17 0.003 0.19 12.4 1.2 2 23 141 163 140 163 0.91 5 17 0.00054 0.034 14.7 2.0 1 23 169 192 169 192 0.94 6 17 0.00018 0.011 16.2 1.5 1 23 198 221 198 221 0.94 7 17 0.0002 0.013 16.0 0.1 1 23 227 250 227 250 0.98 8 17 4.3e-06 0.00027 21.3 0.9 1 23 256 279 256 279 0.97 9 17 0.0016 0.099 13.2 1.8 1 23 285 308 285 308 0.95 10 17 2.6e-05 0.0016 18.9 2.7 1 23 314 337 314 337 0.98 11 17 0.5 31 5.4 2.5 1 23 343 366 343 366 0.95 12 17 0.00024 0.015 15.8 0.2 1 23 372 395 372 395 0.95 13 17 0.00075 0.047 14.3 0.3 1 23 401 424 401 424 0.98 14 17 0.0024 0.15 12.7 0.5 1 23 430 453 430 453 0.97 15 17 0.00023 0.014 15.9 2.4 1 23 459 482 459 482 0.95 16 17 0.0025 0.15 12.6 1.5 1 23 488 511 488 511 0.96 17 17 1.6 97 3.8 0.2 2 20 518 536 517 537 0.91
Sequence Information
- Coding Sequence
- ATGGAATTCTCTACTCAAGTCCCTGTGAAAGAAGAGACACCTTTGAACATCCCCTACGAGGGAGAGCTATATCCCTCAAAAGATGATGACAAGGACATTTCTAGCCGCCTATGTCCTGAGGAACCGAAACATTCCTGTCCTCTCTGTGAATATAATTCGCTTTCATCTAGCACGTTAAAACAACACTTAAAATCCAAGCATTCAAGTAGAACTTATCACTGTCTCCACTGTGACTACATTTCTCCTCTCTCTGGTCGGCTGAAGAGACACATCTTAGCCAAACATACTAAAGAAAGACCATATTCCTGCTCCCGGTGTAAGTACAGCACAGTTGATGCTGGGCATTTAAAAAGACACATATTGACACAACATATAGGAAAAACACAGATATTAGACAAACGTGAAGAAATTATACCACTTTCCTGTGACCAATGCGATTTCACTTCAGTAACGCCTTGGCATTTAAAAAGACACACATTGGACAAACATAACGAGCAAAGATCACACTCCTGCCCCCACTGTGAATACAGTGCAGACAAGTCTTCTAATTTAAAGAATCACATATTGGCAAAACATACAGAAAAAAGACCACATTCATGCTCCCAATGCGACTACACAGCAGTTCGGTCAAGTCAATTAAAGAAACACATCTTAGCCAAACATACAGAACAACAACCTTATTACTGTCCTCACTGCGACTACAGCGTAGTGGACATTGGCGATTTGAAGGGACACATATTGACTAATCATACAGATGAAGGAACATTTCCCTGCCCGCACTGCGAATACAGTGCAGTTCAGTCGAGCAATTTAAAGAAGCACATATTGACCAAGCATTCGGGACAAAGACCATATTCTTGCCCCCATTGCGAATTCAGCGCAACTGACTCTTGGTGTTTGAATAGACACATACTCGCCAAACATACCGAACAAAGACCATATTCCTGCTCCCACTGCGAGTACTGTTCTGCTGATCCAGGCAATTTAAAAAGACATATATTAACCAAACACACAGAACAAAAACCTTATCACTGCCCCCACTGTGAGTACAGATCTATATCAATTTCCATTTTAAAGACACACGTAATGTCCAAACATACCAAGCACTTTCCATATTCTTGTCCAAATTGTGAATACAGTGCAGTTAGGCGTGTTCAATTAAAAAGACACATATTGGCCAAACATACAGAACAAAGACCATATTCCTGCCCCCATTGTGAGTACAGCGCAGTAGAATCTGGTGAATTAAAGTTACACATATTGACTAAACATACAGAGCTAAAACCTTATTCTTGCCTCCATTGTGAGTACAGTGCAGCTCAGTATGGACAATTAGAGAAGCATGTATTGACAGAGCATACAGAAAAAATACTACATGCCTGTCCCCAGTGCGAGTACAGTACAGTTCATTTAAGTGATTTAAAGAGACACATATTGAAAAAACATAAAGAACAAAGACCACATCCATGTCCCCACTGTGAGTACAGATCAGCAAAGCTGTCTGCTTTGAAGGCACATGTAACGACTAAACACGCAGACCAACTTCCACTATCATGTCCCCAGTGCGAATATAGTACATTAGAACCTTGTAATTTGAAGAGTCACATAATATGTAGCCATTCAGGACTAAAACGATAA
- Protein Sequence
- MEFSTQVPVKEETPLNIPYEGELYPSKDDDKDISSRLCPEEPKHSCPLCEYNSLSSSTLKQHLKSKHSSRTYHCLHCDYISPLSGRLKRHILAKHTKERPYSCSRCKYSTVDAGHLKRHILTQHIGKTQILDKREEIIPLSCDQCDFTSVTPWHLKRHTLDKHNEQRSHSCPHCEYSADKSSNLKNHILAKHTEKRPHSCSQCDYTAVRSSQLKKHILAKHTEQQPYYCPHCDYSVVDIGDLKGHILTNHTDEGTFPCPHCEYSAVQSSNLKKHILTKHSGQRPYSCPHCEFSATDSWCLNRHILAKHTEQRPYSCSHCEYCSADPGNLKRHILTKHTEQKPYHCPHCEYRSISISILKTHVMSKHTKHFPYSCPNCEYSAVRRVQLKRHILAKHTEQRPYSCPHCEYSAVESGELKLHILTKHTELKPYSCLHCEYSAAQYGQLEKHVLTEHTEKILHACPQCEYSTVHLSDLKRHILKKHKEQRPHPCPHCEYRSAKLSALKAHVTTKHADQLPLSCPQCEYSTLEPCNLKSHIICSHSGLKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -