Ofas007862.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1459:105739-116367[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0055 0.34 11.5 0.4 1 23 372 394 372 394 0.98 2 17 0.00079 0.049 14.2 0.5 2 21 403 422 402 423 0.93 3 17 0.00011 0.0069 16.9 2.6 3 23 431 451 429 451 0.96 4 17 0.00042 0.026 15.1 0.7 3 23 459 480 458 480 0.93 5 17 0.0017 0.1 13.2 3.6 1 23 486 508 486 508 0.96 6 17 3e-07 1.9e-05 24.9 1.0 1 23 517 540 517 540 0.97 7 17 0.023 1.4 9.6 0.3 1 23 550 572 550 573 0.95 8 17 0.19 12 6.7 0.9 1 23 594 616 594 616 0.95 9 17 0.058 3.6 8.3 0.2 1 23 622 644 622 644 0.92 10 17 0.09 5.6 7.7 2.2 1 23 663 685 663 685 0.95 11 17 4.9 3.1e+02 2.2 0.3 1 23 691 713 691 713 0.93 12 17 2.6e-06 0.00016 22.0 0.8 1 23 729 751 729 751 0.99 13 17 1.4e-06 8.7e-05 22.8 0.5 1 23 757 779 757 779 0.98 14 17 0.0027 0.16 12.5 0.5 1 23 785 807 785 807 0.98 15 17 0.00082 0.051 14.1 3.4 1 23 813 835 813 835 0.98 16 17 8.5e-06 0.00053 20.4 0.9 1 23 841 863 841 863 0.99 17 17 2.1e-05 0.0013 19.2 0.6 3 23 871 892 870 892 0.97
Sequence Information
- Coding Sequence
- ATGGCTCCTCCAAGAGACCCTTTACAAAGTTTTGCTCCTAAAAGGCCAGAAATAATTGAGTCACCTAAACTATTTGATTATGACTCCAGAGGCTATTTTTCTGAAGAAAGTGAAGATACGAAGGAAGATGTGCACCTCCAACTTCGCTTATGTCGTTTATGTGCTTCCCCTTATGATGATTGTATTATGATTTTTGATGAATACGGAAGAGATATGAAGATAGCTGAGAAGATAAACTTGTGCTTACCAATAGAAGTTCACATGACTGATGGACTTCCAAAACAAATATGTAGAGCATGTTTTAATCAACTGAATGATCTTTTTGATCTTGCTGATATGTGTAGTCTTACACAACAGAAACTGGAACATTTAAATGATGTCTGCTCAAGTACTGAAGATTTGGCAGTTGTTTCATTTGATGATGTTGGAGAAGAAGTAATTTTTGGGACATCATCTTTTAACTATAAGGATAGTGAAGATTTATTAGATTGTTGCCCTCTTTGCAAAGAAGGGAAAATGCTACTTTCAGATAAAAAAAAGAACAACTCTGGTGAGTTATCCTCAGTATTTGGCTGCTTAAATGATATGGACCCCTTAAGCTTAGAAAGAAGTGATCTTAAAAACAATTGTATCGAACATAATGATTATTCATTTGCTAGTATGTACTCAGAATCATTAGAAAAAAAGAAAGAAATTAGTTCACAAATAATTTATGATAATTCAGACATAGATTCTAATGTTGGTTGTTCTTCAGAAGATTTCACTAAAGAGACTGACCCTCTTAAACTGGATGATAGCTCCTCAAAAAGTGACAATGAACAAATTAGTGATTGCTATTCATCTTTAACCTCCCCTTTGAATATAATGGGCGGCTCTGAAGATTCAAATCATAAGCCTTCTAGAGATCACCAATTATCACCTATTAATGAGGAATTAACAATGGAGTCAGATTTTTATAATATGGACAGTGAATCTGAAAATTCAAATTCAATGCCAGCATTTGGAGAAAATTCTAACAACAGAACCACTTTATTTTGTAGAATTTGTGCTTCAGAATTTCATTCATTCAAGGAATTATTAAAGCATTCTTATTCTCACTCATTTAAAGGTTTTTATCAGTGCACTGCTTGTGTGTCAGTATTTTTCACAAAAGAAGACTTGGAAAATCATTATAATATCCATGAGGAGGAAGATTTAAATGTTATTTATTGTGATGTGTGCACTAAATCATTTAAATCTGCTGTTTCTTTGGCATCTCATTTGTGTAATGAAGAGGAGGTAAATATTAACTGTACTATTTGTAAAAAGCAATTCAGAAGTGAATCAAGGCTCAGGCAACACATGAAGTTTCATGATGGTGCTCGTCCAGCCTTTTGCAATATTTGCAAAAAAATATTTACTGATGAAGCCAAACTTCAGAAGCATAATATGTACATTCATAATAAGAAAAAAGCACACTGCTGTGAAGAATGTGGCAAGCTATTTAAATCTGAAGCTTCTATGAGATACCATCAAAGAGCTCATCAAAGTGATGATAGTGTGAAACCATACACTTGTGAGCGCTGTGGAAAATCATTCATCAGAAAAAGTATGCTTATTAACCATATGACATCATCTCACAAACATATGGCTTTTGAAACTCCATGTTTTACTTGCAAAATTTGTTATGAAGCTTTTCCGAGCACTGCAGCTGCTGTTTCACACATGGATAATCACCATAAACTGGAATGCATGGATGAGTCTACATACAGTTTTGAAATGCATACTATAAATAGATTGTATATTTGTGAATTTTGTGAACGCTGTTATGCAGAAGGCAGTGTTTTGAATCAGCATCGTGAACAGCATCCCTCTGAAGCTCCTTATGAATGTAAATTTTGCGACACCACATTTGCGATACTTGAAGATGCAATTCAACATCGATCTGAACATTCGAATGAAGAATTACCATCAGAGTATTTATCAGAATTTACCATACCCAGAACTTATTTGTGTGAATATTGTGAAAGATGTTTTTTGAATCAAGTTAAATATAATGAACATCTTACTGTTCATTATGGACCAGAGCCATATCAATGTCGCAGTTGCTCCTCAAAATTTGCTACATTGTTAGAAGCAATAGAACATAGGTCAATACATGCAGATTCTTCCCCCAACACAGATGATTATAACTTCTACAGGCCATATGAATGTCACTATTGCAGTAAAACATTTGCAATTGAAGATGCATTAATTAAACATATAAGAATGCATACTGGCGAAAAACCTTTTATTTGTGATCAGTGTGGAAAAGGATTCTCACAGAGTTCAGGTCTTTATACGCATCAAAAAGTTCACTCCTCTGAGCGGCCCTATTCGTGCACAGTTTGTCCTCGCACTTTTAAGATAAAGGGAGATAGAGATGTTCATGTTCGGAAACATTCTGGAGATCGTCCTTATAAGTGTGAATTCTGTGGAAAAGCATTCATGACCCAGCATGTTTATAGCCAGCATAGAAAAATACATACAGGTGAGCGACCTTACAAATGTGATGTCTGTGGCATAGCCTTTCGAAGGTCTCATGTTTTAACTGTTCACAAACGTATTCATACTGGGGAAAAACCAAATATATGTGATATTTGTGGTAAAAGATACCGACAAAAAGGTGATATGCTTAAGCATAGAAGGGTACAACATGGAATTGTTAGTACAAAACCTGTTAGTCAATTAGTAAATCAACTTAATGTTTGTTGA
- Protein Sequence
- MAPPRDPLQSFAPKRPEIIESPKLFDYDSRGYFSEESEDTKEDVHLQLRLCRLCASPYDDCIMIFDEYGRDMKIAEKINLCLPIEVHMTDGLPKQICRACFNQLNDLFDLADMCSLTQQKLEHLNDVCSSTEDLAVVSFDDVGEEVIFGTSSFNYKDSEDLLDCCPLCKEGKMLLSDKKKNNSGELSSVFGCLNDMDPLSLERSDLKNNCIEHNDYSFASMYSESLEKKKEISSQIIYDNSDIDSNVGCSSEDFTKETDPLKLDDSSSKSDNEQISDCYSSLTSPLNIMGGSEDSNHKPSRDHQLSPINEELTMESDFYNMDSESENSNSMPAFGENSNNRTTLFCRICASEFHSFKELLKHSYSHSFKGFYQCTACVSVFFTKEDLENHYNIHEEEDLNVIYCDVCTKSFKSAVSLASHLCNEEEVNINCTICKKQFRSESRLRQHMKFHDGARPAFCNICKKIFTDEAKLQKHNMYIHNKKKAHCCEECGKLFKSEASMRYHQRAHQSDDSVKPYTCERCGKSFIRKSMLINHMTSSHKHMAFETPCFTCKICYEAFPSTAAAVSHMDNHHKLECMDESTYSFEMHTINRLYICEFCERCYAEGSVLNQHREQHPSEAPYECKFCDTTFAILEDAIQHRSEHSNEELPSEYLSEFTIPRTYLCEYCERCFLNQVKYNEHLTVHYGPEPYQCRSCSSKFATLLEAIEHRSIHADSSPNTDDYNFYRPYECHYCSKTFAIEDALIKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSSERPYSCTVCPRTFKIKGDRDVHVRKHSGDRPYKCEFCGKAFMTQHVYSQHRKIHTGERPYKCDVCGIAFRRSHVLTVHKRIHTGEKPNICDICGKRYRQKGDMLKHRRVQHGIVSTKPVSQLVNQLNVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -