Ofas008302.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1431:142480-146534[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8e-05 0.0011 19.3 0.9 1 23 63 86 63 86 0.97 2 14 9.2e-06 0.00057 20.3 1.1 1 23 92 115 92 115 0.97 3 14 5.1e-05 0.0032 17.9 3.1 1 23 121 144 121 144 0.96 4 14 8.8e-05 0.0055 17.2 1.2 1 23 150 173 150 173 0.94 5 14 0.0004 0.025 15.1 1.0 1 23 178 201 178 201 0.96 6 14 0.0029 0.18 12.4 2.5 1 23 207 230 207 230 0.95 7 14 0.00063 0.039 14.5 2.8 1 23 236 259 236 259 0.96 8 14 3.3e-05 0.002 18.5 1.6 1 23 265 288 265 288 0.97 9 14 4.9e-05 0.003 18.0 1.5 1 23 294 317 294 317 0.94 10 14 0.00075 0.047 14.3 3.1 1 23 323 346 323 346 0.96 11 14 0.018 1.1 9.9 3.8 1 23 352 375 352 375 0.93 12 14 1.2e-05 0.00076 19.9 4.2 1 23 381 404 381 404 0.97 13 14 0.00075 0.047 14.3 3.1 1 23 410 433 410 433 0.96 14 14 0.0075 0.47 11.1 5.0 1 23 439 462 439 462 0.97
Sequence Information
- Coding Sequence
- ATGGGCTACACAGTGAAGGAAGAGCAACCTTTGGACATCCCTTTTGAGGGCGTTCATTTTTTAGTAGAAGGTGAGTGTGATGAAGCCCTTTCAGTCTCTTCACACCATGGGATCTCTGTGAGTAAGACAACCTGCTCTGGAGATTTGAAAAGACCTGTGAATCTCAAGTGTTCTAAAATGGAGATTTACAACTGTGACCTATGTGATTACAGCTCTTCTACATCTGGCAAACTGAAAGCCCATATGAAGTCAAAACATACCGGATTTAAACAGTATTCTTGCCCACACTGTGATTTCAACACCTCAACAAGTGGTAATTTAAATGTACATATAATGTCTAAACACACAGGACAACGGCCTCATTCCTGCTCTCATTGTGATTATTCTTCAGCTACAAAAGGTAATTTAAAGGTTCATATAATGTCTAAACACACCGGACTACGGCCATTTCTGTGTCCCCATTGTGATTTTAGTGCAGTTACAAGTGGTAATTTAAAGAAACATCTAATGTCCAAACATACAGGACAGCCTCATTCCTGTCCTCAATGTGAATTCAGTGCAGTTAAAAGTAGTGATTTGGAAAGACATATCAAGTCTAAACACTCTGAGCAACGGGTACATGCCTGTTCTCACTGTGAATTCACTTCAGCTTCAAGCAGTAATGTAATCAGACACATACAATCCAAGCACAGTGGTCAGCGGCCACATTCATGTCCTCATTGTGATTTCAGTGCAGTAACGAGTAGTTATTTAAGGACTCACGTTATGTCTAAACACACTGGCCAACGGCCTTATTCCTGTCCTCACTGTGATTTCAGTGCAGTAACAAGTAGTTATTTAAAGACTCACATTATGTCTAAGCACACTGAACAAAAACCTCATTCTTGCCCTCACTGCGAGTACAGTACTGTAAGGAGTGGCAATTTAAAGATACATATAATGGCCAAACACACTGGCCAACGGTCACATTCCTGTCCTCACTGTGATTTCACTGCAGTAACAAGTAGTTATTTAAAGACTCACGTTATGTCTAAACATACTGAGCAAAAACCGCATTCATGCCCCCACTGTGAGTACAGTACTGTAAGAAGTGGGAATTTAAACTGTCATATAATGGCCAAACACACTGGCCAGCGGTCACATTCCTGTCCTCACTGTGGTTACAGTACAGTAACAAGAAGGGATTTAAAGAGACATCTTATGACTAAACACACTGAAAGACGGCCACATTCCTGTCCTCACTGTGATTTCACTGCAGTAACAAGTAGTTATTTAAAGACTCACGTTATGTCGAAACACATTGAGCAAAAACCTCATTCTTGCCCCCACTGCGAGTACAGTACTGTAAGAAGTGGGAATTTAAACTGTCATATAATGACCAAACACACTGGAAGACGGTCACATTCCTCCCCCCAGTTCATAAATAAAGGCAGTTATTAA
- Protein Sequence
- MGYTVKEEQPLDIPFEGVHFLVEGECDEALSVSSHHGISVSKTTCSGDLKRPVNLKCSKMEIYNCDLCDYSSSTSGKLKAHMKSKHTGFKQYSCPHCDFNTSTSGNLNVHIMSKHTGQRPHSCSHCDYSSATKGNLKVHIMSKHTGLRPFLCPHCDFSAVTSGNLKKHLMSKHTGQPHSCPQCEFSAVKSSDLERHIKSKHSEQRVHACSHCEFTSASSSNVIRHIQSKHSGQRPHSCPHCDFSAVTSSYLRTHVMSKHTGQRPYSCPHCDFSAVTSSYLKTHIMSKHTEQKPHSCPHCEYSTVRSGNLKIHIMAKHTGQRSHSCPHCDFTAVTSSYLKTHVMSKHTEQKPHSCPHCEYSTVRSGNLNCHIMAKHTGQRSHSCPHCGYSTVTRRDLKRHLMTKHTERRPHSCPHCDFTAVTSSYLKTHVMSKHIEQKPHSCPHCEYSTVRSGNLNCHIMTKHTGRRSHSSPQFINKGSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -