Ofas007962.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold636:247490-253698[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.065 4 8.2 1.7 1 23 53 76 53 76 0.90 2 15 0.0004 0.025 15.1 0.6 1 23 99 122 99 122 0.92 3 15 0.0012 0.076 13.6 3.5 1 23 158 181 158 181 0.98 4 15 5.8e-05 0.0036 17.7 0.8 1 23 187 210 187 210 0.97 5 15 0.00024 0.015 15.8 0.6 1 23 216 239 216 239 0.97 6 15 0.0036 0.23 12.1 2.1 1 20 245 264 245 268 0.95 7 15 0.00074 0.046 14.3 1.4 1 23 274 297 274 297 0.95 8 15 5.4e-05 0.0033 17.9 1.2 1 23 303 326 303 326 0.97 9 15 0.016 0.98 10.1 0.6 1 23 332 355 332 355 0.97 10 15 0.0014 0.086 13.4 1.0 1 23 361 384 361 384 0.93 11 15 0.00045 0.028 15.0 0.0 1 23 390 413 390 413 0.93 12 15 1.4e-05 0.00087 19.7 0.5 1 23 419 442 419 442 0.97 13 15 0.0079 0.49 11.0 3.8 1 23 448 471 448 471 0.95 14 15 0.00085 0.052 14.1 4.3 1 23 477 500 477 500 0.96 15 15 9.6e-06 0.00059 20.2 1.1 1 23 506 529 506 529 0.98
Sequence Information
- Coding Sequence
- ATGTCTCAAATAATGATTTTCAATTATCTTCTTCAAGGCCTCCCAATAATCTTCCTTATGACTTATAATAAAGGGTGTGGTATTCCAGATCTATCTGAAGATGAGGCTGTTTTCACCAAAAGTAATGTGGCTTCTCCAGGATCACCATTTCCTTTGTTTGTATGCCATCATTGTGGTTATACTGCTGATGGTAAGGGAGCTATCAGGACTCACATATTTCAAAAACATGCAGAAATTTTTCTTCTAAGTTGCCATTTTTCTACTCACTTAACCAAAGAAATGACTGAGCATTCTTACTTGTGTCCACATTGTGATTTTAGTTCAATTTCAAAGGAGGAGTTGAAAAAACATGTCATAAATATACATAATGATGAATTGTTTAATCCTGATATTTTCTGTGAGTACAGAACTGCCAAATCTTCATATTTAAACACACAGTTATTGGATAACCAAAATGAAGGACAATGGCCTTATACTTGTAATTCCTGTGATTACAAATCCAGGGAGTTTTTTAACTTGAAGAGGCATATAAGATCTAAGCATACTGGAGAAAAGCCTTATTCTTGCCCTCAATGTGAGTACAGTGCAGCTAGTTCTGGTCATTTGAAGAAACACATTATGTCTAAACATACAGGTGAGCGTCCTTATTCATGCACACAATGTGAGTACAATACTACAGACTCTGATTCATTGAAAGCTCATGTTATGTCTAAGCATACTGGTGAACGGCCTTACTCTTGTTCTCAATGTGACTTCAGTACAGTTACTTCTCGTTCCTTGAAAGCACATATAATATGCAAACATACTGGTGAACGACCTTATTTATGTTCACAGTGCGACTACAGTACTTTTAGTTCTAACTCATTAAAGATACACATGATGTCCAAGCACACTGATGAACGACGTTACTCTTGCCCCCAATGCGAGTACAGTACAACTAAGTCTAATAATTTGAAGATGCACATAATGTCTAAGCATACTGGAGAACGGCCTTATTCTTGTTCGCAGTGTGAGTACAATGCAGTCAGTGCTTATAAACTGAAGATGCACTTAATGTCCAAGCATACTGGCGAACGGCCACATCCTTGTTCTTTCTGCGAGTTCAGTACAGTAAGATCAAGTACATTGAAGGCGCACATACTGGCTAAACACACTAGCATACGTCCCTATGCTTGCTCTTATTGTGAGTATAGCACAGCTAATGCTGGTGATTTGAAGACACACATAATTGCCATGCATACAGATGAACGGGCTTATCCATGTCCATACTGTGATTACAGTTCTGATAGATCTAATTCATTAAAGTCACACATAATGTCCAAGCATACTGGTGAACGACCCCATTCTTGCCCTCACTGTGAATATAGAACAGTAAAATCCTATGTTTTGCAGAGGCATATCATGTATAAGCATACTGACGAACGCCCTCATTCTTGCCCCCATTGTGAATATAGTACTGTAAAATCTTACTATTTGAAGCAACATATAATGTCTAAGCATTCTGATGAACGACCTTATTCTTGCCCTCATTGTGAGTACACTGCTGCATTACCCAGTAATTTGAAGAGGCACTTAAGAACCAAGCATTAA
- Protein Sequence
- MSQIMIFNYLLQGLPIIFLMTYNKGCGIPDLSEDEAVFTKSNVASPGSPFPLFVCHHCGYTADGKGAIRTHIFQKHAEIFLLSCHFSTHLTKEMTEHSYLCPHCDFSSISKEELKKHVINIHNDELFNPDIFCEYRTAKSSYLNTQLLDNQNEGQWPYTCNSCDYKSREFFNLKRHIRSKHTGEKPYSCPQCEYSAASSGHLKKHIMSKHTGERPYSCTQCEYNTTDSDSLKAHVMSKHTGERPYSCSQCDFSTVTSRSLKAHIICKHTGERPYLCSQCDYSTFSSNSLKIHMMSKHTDERRYSCPQCEYSTTKSNNLKMHIMSKHTGERPYSCSQCEYNAVSAYKLKMHLMSKHTGERPHPCSFCEFSTVRSSTLKAHILAKHTSIRPYACSYCEYSTANAGDLKTHIIAMHTDERAYPCPYCDYSSDRSNSLKSHIMSKHTGERPHSCPHCEYRTVKSYVLQRHIMYKHTDERPHSCPHCEYSTVKSYYLKQHIMSKHSDERPYSCPHCEYTAALPSNLKRHLRTKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -