Ofas016111.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1294:290630-297217[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.3 18 6.1 7.3 1 23 62 85 62 85 0.96 2 15 0.0011 0.069 13.7 2.0 1 23 91 114 91 114 0.96 3 15 0.0014 0.089 13.4 0.7 1 23 120 143 120 143 0.94 4 15 0.00024 0.015 15.8 0.2 1 23 149 172 149 172 0.97 5 15 0.0027 0.17 12.5 1.1 1 23 178 201 178 201 0.95 6 15 0.0068 0.42 11.2 0.0 1 23 206 229 206 229 0.94 7 15 2.4e-05 0.0015 18.9 0.7 1 23 235 258 235 258 0.96 8 15 0.0039 0.24 12.0 0.9 1 23 264 287 264 287 0.96 9 15 0.00032 0.02 15.4 0.3 1 23 293 316 293 316 0.97 10 15 0.00024 0.015 15.8 0.4 1 23 322 345 322 345 0.93 11 15 0.00019 0.012 16.1 1.1 1 23 351 374 351 374 0.95 12 15 0.00058 0.036 14.6 0.8 1 23 380 403 380 403 0.96 13 15 6.6e-05 0.0041 17.6 2.1 1 23 409 432 409 432 0.98 14 15 1.5e-05 0.00094 19.6 2.5 1 23 438 461 438 461 0.96 15 15 0.00019 0.012 16.1 1.3 3 23 469 490 468 490 0.97
Sequence Information
- Coding Sequence
- ATGTTAGCCTCTGAAATGCCTTCTGAAGATATGCCATCTACCTCTGGGGTGTTATGTGTTGTCAAAGAAGAACCAGTTCTGAACATGTCTTCAGAAGACGATTTTGGTATATCTGATGATGAATCTGGCAACACGAAAAGTAACAAGCTCTCAATAGGTTCCTCGCACCATGGTTCAATATCTCATTCCTGCCTTTATTGCGATTACAAGTCACACTATATAAGTCATTTGAAGAGACACGTCATGTCTAAGCACACTGGAGAACGACCATTCGCCTGTAACATGTGTGACTACAAATCCACACACCGATCGGCTGTGAGGAATCACATAATGTCCAAGCATACCTTGGAGCGGCCTTATTCTTGCACCCTCTGCGACTATAAAGCCACGCAGTCTTCTGCTTTAAAAATACACTTCATATCGAAGCATAGTGATGAACTGCCCTATTCCTGTCCCAGCTGCGAATACAGCACTGCCGTGTCCGGAGATCTGAAGCGTCACATAATGTCCAAACATACCGGCGAGCGACCGTTTGCTTGCCTCCATTGCGACTACAGGTCGACTAAGCCTGCCGGCCTGAAGCAGCACTTGCTGTCCAAGCACGAGGAGAAGCGTTTTGCTTGCCAAGACTGCGATTACAGTACGGCCGTATCCGCGGAACTGGACGTCCACATAATGGCCAAGCACACTGGGGAGCGACCCTATCCTTGCTCGCTGTGCGATTACAGTACGACCACGGCACGCACTCTCAAGCGACACATAAAGGCCAAGCATACAGACCTGCAGACATACTGCTGTGACCTCTGTGACTACAGCTCTGTGAGAGCCGATGACGTCAAGACGCACGTGATGTCCAGACACACGGGAGAACGTCCCTACCCCTGTCCCTACTGCGAGTACAGTTCAGTCGCGTCCGGGACTCTCAAGAAACACCTCAAGTCCAAGCACACCGATGAGAGGCCTTATTCCTGTCAACAATGCGACTACAGCTCAGCGAGATCCGACGACTTGAAGACACACGTGCTGGCCAGACATTCCACGGAGAAGCCGTTCATCTGCACTCAGTGCGAGTACAGTAGCGCCACCTCGAGCACCCTGAAGAAGCACCTGAAGGCCAAGCACTGCGACGAAAGACCTTACAATTGCACCTTCTGCGAGTACAGTACAGCCGGTTCCAGCGACCTCAAGCGCCACGTGATGTCCAAGCACACCGGAGAGCGGCCCTATTCCTGCCCCTACTGCGAGTACAGGGCCACCAGGTTGTGCGACTTGAAGGCCCACATGCGATCCAGACACACGGGCGAACGTCCTTACCAGTGTTCCTACTGCGATCACAAGTCTGTTCAGTCCAGCGATTTGAGGAAGCACATGATGGCCAAACATACCTTCGAACGGCCGCATGGCTGCTCGCAATGTCAGTACAAATCCACAACATCCAGCGACTTGAAGAAGCACATTCGAGCCAAGCACTGA
- Protein Sequence
- MLASEMPSEDMPSTSGVLCVVKEEPVLNMSSEDDFGISDDESGNTKSNKLSIGSSHHGSISHSCLYCDYKSHYISHLKRHVMSKHTGERPFACNMCDYKSTHRSAVRNHIMSKHTLERPYSCTLCDYKATQSSALKIHFISKHSDELPYSCPSCEYSTAVSGDLKRHIMSKHTGERPFACLHCDYRSTKPAGLKQHLLSKHEEKRFACQDCDYSTAVSAELDVHIMAKHTGERPYPCSLCDYSTTTARTLKRHIKAKHTDLQTYCCDLCDYSSVRADDVKTHVMSRHTGERPYPCPYCEYSSVASGTLKKHLKSKHTDERPYSCQQCDYSSARSDDLKTHVLARHSTEKPFICTQCEYSSATSSTLKKHLKAKHCDERPYNCTFCEYSTAGSSDLKRHVMSKHTGERPYSCPYCEYRATRLCDLKAHMRSRHTGERPYQCSYCDHKSVQSSDLRKHMMAKHTFERPHGCSQCQYKSTTSSDLKKHIRAKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -