Ofas012496.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold1403:49390-63139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0014 0.086 13.4 5.9 1 23 103 125 103 126 0.96 2 18 0.00075 0.046 14.3 0.9 2 23 143 164 142 164 0.97 3 18 3.9e-06 0.00024 21.4 0.7 1 23 170 192 170 192 0.97 4 18 1.1e-05 0.00069 20.0 1.8 1 23 198 220 198 220 0.98 5 18 0.00022 0.014 15.9 1.0 1 23 227 249 227 249 0.98 6 18 0.029 1.8 9.3 3.1 1 23 255 277 255 277 0.98 7 18 2e-06 0.00013 22.3 0.3 1 23 283 305 283 305 0.96 8 18 4.4e-07 2.7e-05 24.4 0.2 1 23 311 333 311 333 0.98 9 18 0.0051 0.32 11.6 0.6 3 23 342 362 341 362 0.96 10 18 0.0063 0.39 11.3 3.9 1 23 423 445 423 445 0.93 11 18 7.6e-05 0.0047 17.4 0.2 2 22 448 468 447 468 0.94 12 18 1.4e-05 0.00086 19.7 1.7 1 23 511 533 511 533 0.98 13 18 0.0017 0.11 13.1 0.7 1 23 539 561 539 561 0.98 14 18 8.7e-06 0.00054 20.3 0.3 1 23 567 589 567 589 0.98 15 18 0.0047 0.29 11.7 2.6 1 23 595 618 595 618 0.93 16 18 0.11 6.9 7.4 0.3 3 23 623 644 621 644 0.94 17 18 4.1 2.5e+02 2.5 0.0 9 23 661 675 656 675 0.92 18 18 0.002 0.13 12.9 1.3 1 23 734 757 734 757 0.95
Sequence Information
- Coding Sequence
- ATGGCGGCGATAGAGGCTATGGAGGAGGTTGTTTTGAAAGAAGAGGTTGTATTTGTTGATGAATACTTTCCTATTGACTTGCACGAAGAAGAAGTCATTGCAGAAACTATAGATCCAGCTGATGTTGTAAACGAGCAGCGTGAAGACCATGAAGAAATTATACACGCTACTAACAGCATACTTCTTGATGGATATGATCCGCTCGACCCCAATCAGTGGACTCAAGAAGAGGTTATTATTGAATCCACTGATCCACCTACATTCATTAAACAAGAAATTATTGAAGAAGAAGAACAAACTCATGTATATGAGTGCTATAAATGTGCTCGGAGGTTTAATTTTAAAGATAAATTATTCAAGCACATGAAATTACACCATGCTAGAGGAGATGATGTTATGATTGAGAGAGATGGAAAACGAATCTGGACCTGTACCCAGTGTGATAAAACCTTCATATCTCGAAAAGGTTCTATTATACACCAACGTACACATACAGGAGAACGTCCCTATTCTTGCAGTGTCTGTCAGAAGAGGTTCATTGACAGTAGTACTCTTATGAAACATCAAGTGATTCATCAAGCTACTCGACCTTTTACTTGTGTCGTCTGCCATAGGGGCTTCAATCAAAAAGTGGCTCTTCAGCGCCATGAAAGGACTCATAGTCAACTTCAACCTACTTTCAAGTGTAAATTTTGTCCCAAAACCTTCTTGGTTTCAAGTAGTCTTCAAGCCCATGAAAAAATTCACACAGGAGTTAAACCTTACACCTGTCAATACTGTCCCTCCAGATTTCATACATCGACTGCCCAAAGACAGCATGAAAGGGTACATACTAATGAAAGACCATATGCCTGTAATTATTGCCCAAAAGCATTTAAAGACTCTGGCACACTGTTCAAACATCAGGTAATACATTCTGGAATTCGTCCATTTGTGTGTCCTATTTGCTCTCAAGGCTTTACTCAAAAAGTAGCCCTTCGTAAACACATAAGATCACATGTATCACGTCATGTTGGTAATAACTGTGAAGTTTGTGATAATGTTTATTTTAATAAAGATGAACTGTGCAGTCATATTGAAGAACACATTGAGCAGCATCCTAGCTTCACTCAAGTTAAAAATATAGCAACTTCTTCAGTTCGCATTAAAACACAACCTCTGAGTCCTGAGCCACCTGAACCTGAAGCTAAAGAAAGTGGTGATTTGAGTGATTTAGCCACTCTTTGTGATGTGGCTATTTCTACTGCTGGTGATCTTGCTCATTCATACCCTTGCCTTCATTGTGGGATGAGTTTTAGGCGTAAAAAATCTTTAGATTGTCATTTGTCAATACATAGAACTACCTGTAAATATTGCGATAGACCATTTCCTGATAAAGCATCATTGGAAACTCATGAGCGCAGACTGTGTTCTGAGTCGTCTCCCCCTCAACCAGAAACTGATAAAGCAATTGAAGGGATACAAGTCATCCGAGAGGGTATGCAATCTGTGCGTGAGCAGTTTTCAGGTGGTAAAAATCCTAAACGATTTTTCTATTGTGAAAGGTGTGATAAGACATTTAGTTCACGAAATGGCTATATCATTCATCAACGAAGTCATACTGGAGAACGTCCATATCCTTGTCGGTGGTGTGACAAGGCTTTTGGAGACTCTGCTACAAGACACAAACATGAACGCATTCACACTGGAGAAAGACCATTCAAATGCTCTCGTTGCCCAAGAGCTTTCAATCAGAGAGCTGCTTTACGTGCTCACCAAGTGACACATACTGTTGATAGAGCTTTCCTATGTAAATATTGCCCTTCAAGCTTTCCTTATTTTGCTACTCTGAAACGTCATCAACAAGCTTGCCATAATGAAATTGCTTGTCCTTTGTGCAGTATATCAACCAATGATTCAAAGAAACTGCATGGCCATATCATGGCCAAGCATGTCAACATAGTTAGTGGAAGAATCACCTGTATTTTATGTGATGTTGGCAGTTTTTCTGACCCAAATGAATTCTGTGCTCATATAGTCCAACATGGGAAACAGCAGACTCAAGGTTCAAAAACTCGCCCTCCAGTCCGACGAAGACAGTTCATGCGAAAGAAGTCTCTCAGTCCCCCACCAATAAAGGAACCTCAGGATGAAGAACCAGTTGAACAAGTCATCGAACAGACCATTGTCACAGAGGACTTTCAGATTGTCGATGGAGCTCATCCCTGCTCTCTGTGCCCAGCTGTTTACCATGACAAAGAAGATTTAAAAGCACATATCCATTCAGATCATTTGTAA
- Protein Sequence
- MAAIEAMEEVVLKEEVVFVDEYFPIDLHEEEVIAETIDPADVVNEQREDHEEIIHATNSILLDGYDPLDPNQWTQEEVIIESTDPPTFIKQEIIEEEEQTHVYECYKCARRFNFKDKLFKHMKLHHARGDDVMIERDGKRIWTCTQCDKTFISRKGSIIHQRTHTGERPYSCSVCQKRFIDSSTLMKHQVIHQATRPFTCVVCHRGFNQKVALQRHERTHSQLQPTFKCKFCPKTFLVSSSLQAHEKIHTGVKPYTCQYCPSRFHTSTAQRQHERVHTNERPYACNYCPKAFKDSGTLFKHQVIHSGIRPFVCPICSQGFTQKVALRKHIRSHVSRHVGNNCEVCDNVYFNKDELCSHIEEHIEQHPSFTQVKNIATSSVRIKTQPLSPEPPEPEAKESGDLSDLATLCDVAISTAGDLAHSYPCLHCGMSFRRKKSLDCHLSIHRTTCKYCDRPFPDKASLETHERRLCSESSPPQPETDKAIEGIQVIREGMQSVREQFSGGKNPKRFFYCERCDKTFSSRNGYIIHQRSHTGERPYPCRWCDKAFGDSATRHKHERIHTGERPFKCSRCPRAFNQRAALRAHQVTHTVDRAFLCKYCPSSFPYFATLKRHQQACHNEIACPLCSISTNDSKKLHGHIMAKHVNIVSGRITCILCDVGSFSDPNEFCAHIVQHGKQQTQGSKTRPPVRRRQFMRKKSLSPPPIKEPQDEEPVEQVIEQTIVTEDFQIVDGAHPCSLCPAVYHDKEDLKAHIHSDHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00757486;
- 90% Identity
- -
- 80% Identity
- -