Ofas000671.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold2694:54941-60845[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.013 0.83 10.3 1.0 1 23 61 84 61 84 0.95 2 21 0.00076 0.047 14.2 0.9 3 23 93 113 91 113 0.96 3 21 0.0045 0.28 11.8 6.9 1 23 119 141 119 141 0.98 4 21 7.4 4.6e+02 1.7 0.7 3 13 149 159 147 163 0.81 5 21 0.59 36 5.2 0.1 5 22 164 181 161 181 0.91 6 21 9.6e-06 0.00059 20.2 3.4 1 23 188 210 188 210 0.98 7 21 5.1e-05 0.0032 17.9 2.4 1 23 216 238 216 238 0.98 8 21 1.2e-06 7.4e-05 23.1 1.0 1 23 244 266 244 266 0.98 9 21 0.00038 0.023 15.2 5.4 1 23 272 294 272 294 0.98 10 21 0.0018 0.11 13.0 3.0 1 23 300 322 300 322 0.98 11 21 0.00012 0.0074 16.8 1.5 1 23 328 350 328 350 0.97 12 21 1.3e-05 0.00081 19.8 5.9 1 23 356 378 356 378 0.96 13 21 0.00019 0.011 16.2 3.4 1 23 384 406 384 406 0.98 14 21 9.7e-06 0.0006 20.2 2.2 2 23 413 434 412 434 0.97 15 21 0.0052 0.32 11.6 6.5 1 23 440 462 440 462 0.97 16 21 5.8e-05 0.0036 17.8 3.7 2 23 469 490 468 490 0.97 17 21 0.00061 0.038 14.5 3.9 1 23 496 518 496 518 0.98 18 21 8.4e-05 0.0052 17.3 0.7 2 23 525 546 524 546 0.97 19 21 0.00058 0.036 14.6 1.7 1 23 552 574 552 574 0.97 20 21 1.6e-05 0.00098 19.5 2.0 2 23 581 602 580 602 0.97 21 21 0.00041 0.025 15.1 2.5 1 23 608 630 608 630 0.97
Sequence Information
- Coding Sequence
- ATGGATAACGTCGTCTCACTAGAACATATAGTCATCAAGACTGAGCCTGCAGATGAAGAAACGGAGCATGCACATAACTCAGTTTCAGTGAAGGAGGAGCCTGAACTGGACATTCCGTATGAAGGGGATTGTGTTGCTCCAGAGCAGGACTCACTCTGCAAAGAGACTTTTAGGAAACTTTACATCTGCTGGTACTGCGCATACAGTACTGATTATAGGAGAAATCTGAAAGAACACATTTTTTCCAAGCATATGGATGAGCTTACCCCTCAAAACTGCACTTACTGCGACTACAGTACTTTTTCAAAAAATAATTTAGAGATTCATGTGCTTAAGCACACTAGACAAAGTCTCCACAAATGTACCTACTGTTATTTCAGTACATTTCATAAGGACAACCTAAAGGTACACATGGCTAAACATACTGGAGAGGGCGTTATCATATGTTCGTATTGTGATTATAGTACTGCTAAACACGGTCATACCTGTCTCTGTGATAACAGTACAGCTGAGAAGGGTAATCTGAGAATACATATGTGCACACAAGCAAAAGAGAAACCTCATAAGTGTCCTTACTGTGATTACAGTACACCTAATAAGGGTCATCTGAATGAACACATGAGCAAACACACAGGCAAGCGACCTCATACCTGCCTTTACTGTGATTATAGTACAGCTTATCAAAGTAATTTGAAAATACACTTGATGAAGCACACAGGCGAGCGACCTTATACATGTCCAAGTTGTGATTACAGCACTGCTCGGAAGAGTAATCTAAAAATACATATGAGCAAGCATACTGGAGAGAGACCTCATACCTGTACTTACTGTAATTTTAGTACAGCTAATCCCTTTCATTTAAAAATTCACTTGAGGAAGCACACAGGCGAGCAACCTCACACTTGCTCCTACTGTGATTACAGTACTGTTTGGAAGAGTAATCTGAGTACACATATGAGCAAGCACATAGGAGCGAAACCTCATACTTGTTCTTACTGTGATTATAGTACGGTTAGCCCGACTGAATTGAAAATACACTTGAGCAAACACACAGGCGAGCGACCTCATATCTGTCCTCATTGTGATTACTGTACTACTCAAAAGGGGAATCTCAGAAAACATATGAGCATACACACGAAAGAGAAACCTCATACTTGTCCTTACTGTGATTACAATACGTCTGTAAAAAATTATCTGAGGTTGCATATGAAGAAACACACTGGAGAAGGACTTCAGAAGTGTCCGAATTGTGATTATAGTACGGCTAATAAGGCCCACTTGAAAAGACACATGTATAGTCACACTGGCGAGAGACCTCACACTTGTCCCTACTGTGATTACTGTACGTCTGCAAAAGATTGTCTGAGGTTGCATATAAAGAATCATACAGGAGAAGGTCTTCAGAAGTGTCCGAATTGTGATTATAGTACGGTTAAAAAGTCCCACCTGAAAACACACATGTACAGGCACACAGGCGAGAGACCTCATACTTGTCCTTACTGTGATTACAGTACGTCTGCGAAAGGTTGTCTGATGCTGCATATGAAGAAACACACTGGAGAAGGTCTTCAGAAATGTCCGAGCTGTGATTATAGTACGGCTAACAAGGACTACCTGAAAATACACATGTACAGGCACACGGGCGAGAGACCTCATAACTGTCCCTTTTGTGATTACAGTGCGTCTGTAAAAGGTTATCTGAGGTTGCATATGAAGAAACACACTGGAGAAGGTCTTCAGAAGTGTCCTTACTGTGATTATAGTACGGCTAATAAGGCCCACCTGAAAATGCATATGTACAGGCACACAGGCGAGAGACCTCATAACTGCCCATACTGTGATTACAGTACTGCTCGGAAGAATCGCCTGAATTTACATGTAAGAAAGCACTCAGGGTGTTGCCGCCTTTAA
- Protein Sequence
- MDNVVSLEHIVIKTEPADEETEHAHNSVSVKEEPELDIPYEGDCVAPEQDSLCKETFRKLYICWYCAYSTDYRRNLKEHIFSKHMDELTPQNCTYCDYSTFSKNNLEIHVLKHTRQSLHKCTYCYFSTFHKDNLKVHMAKHTGEGVIICSYCDYSTAKHGHTCLCDNSTAEKGNLRIHMCTQAKEKPHKCPYCDYSTPNKGHLNEHMSKHTGKRPHTCLYCDYSTAYQSNLKIHLMKHTGERPYTCPSCDYSTARKSNLKIHMSKHTGERPHTCTYCNFSTANPFHLKIHLRKHTGEQPHTCSYCDYSTVWKSNLSTHMSKHIGAKPHTCSYCDYSTVSPTELKIHLSKHTGERPHICPHCDYCTTQKGNLRKHMSIHTKEKPHTCPYCDYNTSVKNYLRLHMKKHTGEGLQKCPNCDYSTANKAHLKRHMYSHTGERPHTCPYCDYCTSAKDCLRLHIKNHTGEGLQKCPNCDYSTVKKSHLKTHMYRHTGERPHTCPYCDYSTSAKGCLMLHMKKHTGEGLQKCPSCDYSTANKDYLKIHMYRHTGERPHNCPFCDYSASVKGYLRLHMKKHTGEGLQKCPYCDYSTANKAHLKMHMYRHTGERPHNCPYCDYSTARKNRLNLHVRKHSGCCRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -