Ofas006732.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oncopeltus fasciatus
Gene Symbol
-
Assembly
None
Location
Scaffold1852:121851-124194[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00025 0.015 15.8 0.5 1 23 10 33 10 33 0.98
2 22 0.0024 0.15 12.7 6.5 1 23 39 62 39 62 0.95
3 22 5.9e-05 0.0036 17.7 0.4 1 23 68 91 68 91 0.97
4 22 0.0081 0.5 11.0 3.8 1 23 97 120 97 120 0.96
5 22 0.0022 0.14 12.8 2.4 1 23 126 149 126 149 0.98
6 22 0.00032 0.02 15.4 2.3 1 23 154 177 154 177 0.96
7 22 2.7e-05 0.0016 18.8 0.5 1 23 183 205 183 205 0.98
8 22 0.00068 0.042 14.4 1.9 1 23 211 234 211 234 0.97
9 22 0.00045 0.028 15.0 1.7 1 23 240 263 240 263 0.98
10 22 0.003 0.18 12.4 6.4 1 23 269 292 269 292 0.96
11 22 0.019 1.1 9.9 0.4 1 23 298 321 298 321 0.97
12 22 7.3e-05 0.0045 17.4 1.2 1 23 327 350 327 350 0.97
13 22 0.0014 0.085 13.4 1.2 1 23 356 379 356 379 0.97
14 22 0.042 2.6 8.8 5.0 1 23 385 408 385 408 0.95
15 22 0.00015 0.0094 16.4 1.7 1 23 414 437 414 437 0.97
16 22 6.8e-05 0.0042 17.5 4.4 1 23 443 466 443 466 0.96
17 22 2.3e-05 0.0014 19.0 0.6 1 23 472 495 472 495 0.95
18 22 0.0078 0.48 11.1 1.8 1 23 501 524 501 524 0.96
19 22 0.00012 0.0076 16.7 4.1 1 23 530 553 530 553 0.98
20 22 0.0026 0.16 12.6 2.7 3 23 561 582 559 582 0.96
21 22 2.7e-05 0.0017 18.8 1.0 1 23 588 611 588 611 0.96
22 22 0.00029 0.018 15.5 0.6 1 23 617 640 617 640 0.98

Sequence Information

Coding Sequence
ATGCTCAAACATTCAGGGCAAACTCCGTATCCCTGCCCCTATTGCGAGTACGGCGCTGTTCATTCGAAGGCATTAAAAAAGCACATATTGACCAAACATTCTGGAAAAAGACCACATTCCTGCCCTCACTGCGAATATAGTACAAATCGGTCTTGCAGTTTAAGGAATCACATAAGGGGCAAACATACTAACGAACGACCATATTCCTGCACTTACTGTGAATACAGTGCAGTTCGTTCTGGAGATTTAAAGAAACATATAATGATCAAACATTCTGGGCTAAGACCTCATTCTTGCCCCCACTGTGAGTTCACAACAAATCTGTCTAGCAGTTTAAAGTATCACATTATGTCCCAACATACGGAACAAAGACCATATTCCTGTTATCATTGCCAATACAGTTCAGTTCTGTTGGGCAATTTAAAAAAGCACATATTGACCAAGCATTCAGGACAAACATATTCCTGTCCCCATTGCGAGTTCATTACAAATCGGTCCTACAGTTTAAAAAATCACATAAAGGGCAAACATACTAACGAACGACCATATACCTGCACTTACTGCGAATACAGTGCAGTTCGTTCTGGCGATTTAAAGAATCATATGATAAAACATTCTGGACTAAGACCATATTCCTGCTCCCACTGTGAGTTTACAACAAATCAGTCTAGCAGTTTAAAGGGTCACATATTGTCCCTACATACCAAACAAAGACCATATTCCTGTCCCCATTGCGAGTACAGTTCAGCTATTTCGAAGACATTAAAAAGGCACATATTGACCAAGCATTCAGGGCTAAAACCACATTCCTGCCCCCATTGTGAGTATAGCACAACTCAGTCTTGTAATTTAAAATATCATATATTGTCCCAACATACGAAACAAAAACCATATACCTGTCCCTTCTGTGAATACAGTGCAGTACTAACTAGGCAATTAGAAAAACACATATCTTCTAAACATGTAAAACAAAGTTCATATTCTTGCCCTCATTGCGAGTACAGTACAGAGCAATCTGCCCTTTTAAAAAACCACATAACAACTACTCATAGAGAACTAAACCCATATTCATGCCCTCATTGCGACTACAGCGCAACAAAGGCTAGGCAGGTAAAATTACACATAATGAGTAAACATACAGAAAAAAAACCATATTCTTGCTACCATTGCAAATACAGTTCAGTTAATTATTTTCATTTAAAAGATCACATCTTAGCCAAACATACTAACGAACGGCCGTATTCCTGCACTCACTGTGAATACAGTGCTGTTCGTTCTAGCGGTTTAAAGAATCATATAATGAGAAAACATACTGGGCAAAGACCACATATCTGCCCCCACTGCGAGTACAGTACAACTCAGTCTTCCTATTTAAAGAATCACATAAAGAGCAAACATACAGAAGAACGACCTTATTCCTGTCCCCATTGTGATTACGGCGCAGTTCGTTCTAGTGATTTAAAGAGACATATATTATTGAAACATTCTAAGGATCGACCACATTCCTGTCCTCACTGTGAATACAGTGCAGCTTATTCTACCTTGTTAAAGCTTCACATCTTATCCAAACATACGGAACAAAGACCATATTCTTGCCATCACTGTGAATTCAGCACAGTTCAGTTGGGCAATTTAAAAAGGCATATATTGACTAAACATCAAGGACAAAGATCACAAATCTGCCCCTATTGTGAGTTCAGAACAAATCAGTCTTGCAATTTAAAAGATCACATAAAGAGCAAACATACAGAAGAACGTCCATATTCCTGCCCTCATTGCGAATACGGCACTGTTCGTTCTGGCGATTTAAAGAAACATATGATGCTCAAACATTCAGGGCTAAGACCATATTCTTGTCCCCACTGTGAATACAGTGCAGCTCTTTCTTCCTTGCTAAAGAATCACATAAAAAAGATTCATACTACGAGCTGA
Protein Sequence
MLKHSGQTPYPCPYCEYGAVHSKALKKHILTKHSGKRPHSCPHCEYSTNRSCSLRNHIRGKHTNERPYSCTYCEYSAVRSGDLKKHIMIKHSGLRPHSCPHCEFTTNLSSSLKYHIMSQHTEQRPYSCYHCQYSSVLLGNLKKHILTKHSGQTYSCPHCEFITNRSYSLKNHIKGKHTNERPYTCTYCEYSAVRSGDLKNHMIKHSGLRPYSCSHCEFTTNQSSSLKGHILSLHTKQRPYSCPHCEYSSAISKTLKRHILTKHSGLKPHSCPHCEYSTTQSCNLKYHILSQHTKQKPYTCPFCEYSAVLTRQLEKHISSKHVKQSSYSCPHCEYSTEQSALLKNHITTTHRELNPYSCPHCDYSATKARQVKLHIMSKHTEKKPYSCYHCKYSSVNYFHLKDHILAKHTNERPYSCTHCEYSAVRSSGLKNHIMRKHTGQRPHICPHCEYSTTQSSYLKNHIKSKHTEERPYSCPHCDYGAVRSSDLKRHILLKHSKDRPHSCPHCEYSAAYSTLLKLHILSKHTEQRPYSCHHCEFSTVQLGNLKRHILTKHQGQRSQICPYCEFRTNQSCNLKDHIKSKHTEERPYSCPHCEYGTVRSGDLKKHMMLKHSGLRPYSCPHCEYSAALSSLLKNHIKKIHTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-