Ofas003294.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold187:145894-153178[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.089 5.5 7.7 5.9 1 23 45 68 45 68 0.97 2 33 0.0001 0.0062 17.0 0.8 1 23 74 97 74 97 0.98 3 33 0.0051 0.32 11.6 0.6 1 23 103 126 103 126 0.95 4 33 0.00027 0.017 15.7 3.3 1 23 132 155 132 155 0.96 5 33 0.0025 0.16 12.6 5.3 1 23 161 184 161 184 0.97 6 33 0.017 1 10.0 3.2 1 23 190 213 190 213 0.97 7 33 0.00021 0.013 16.0 1.5 1 23 219 242 219 242 0.97 8 33 0.029 1.8 9.3 1.4 1 23 248 271 248 271 0.94 9 33 0.24 15 6.4 2.5 1 23 277 300 277 300 0.96 10 33 5.1e-05 0.0031 17.9 0.8 1 23 306 329 306 329 0.97 11 33 0.0021 0.13 12.8 0.4 1 23 335 358 335 358 0.95 12 33 1.1e-05 0.00068 20.0 1.2 1 23 364 387 364 387 0.97 13 33 0.00048 0.03 14.9 1.0 1 23 393 416 393 416 0.97 14 33 0.0033 0.2 12.2 2.3 1 23 422 445 422 445 0.96 15 33 0.00012 0.0073 16.8 0.6 1 23 451 474 451 474 0.95 16 33 0.054 3.3 8.4 0.8 1 23 480 503 480 503 0.91 17 33 0.00039 0.024 15.1 3.7 1 23 509 532 509 532 0.94 18 33 0.0059 0.37 11.4 4.3 1 23 538 561 538 561 0.95 19 33 0.00027 0.017 15.6 2.8 1 23 567 590 567 590 0.95 20 33 0.0053 0.33 11.6 5.7 1 23 596 619 596 619 0.97 21 33 0.0054 0.33 11.6 7.3 1 23 625 648 625 648 0.97 22 33 0.018 1.1 9.9 2.7 1 23 684 707 684 707 0.93 23 33 0.0015 0.092 13.3 0.4 1 23 713 736 713 736 0.97 24 33 0.00075 0.046 14.3 0.1 1 23 742 765 742 765 0.96 25 33 7.7e-05 0.0048 17.4 0.7 1 23 771 794 771 794 0.92 26 33 0.00051 0.032 14.8 0.3 1 23 800 823 800 823 0.97 27 33 0.0013 0.083 13.5 1.7 1 23 829 852 829 852 0.97 28 33 0.00098 0.061 13.9 0.5 1 23 858 881 858 881 0.92 29 33 9.3e-05 0.0058 17.1 1.2 1 23 887 910 887 910 0.98 30 33 0.00047 0.029 14.9 0.2 1 23 916 939 916 939 0.94 31 33 0.0054 0.33 11.6 3.1 1 23 945 968 945 968 0.94 32 33 0.0011 0.068 13.7 0.2 1 23 974 997 974 997 0.94 33 33 0.0016 0.096 13.3 2.6 1 23 1003 1026 1003 1026 0.96
Sequence Information
- Coding Sequence
- ATGAAAATTCTCAAAAGTCACATTAAAAATATGCATTTATATCAATTTGGGACATCTGTAAAGGAACCAAACTATCGAGTGCTTAGAGAAATACACAAAAATAGGAAAAAAGCAGCTGAAAGAATTAAGCGCTTCCATTGCCAACTTTGTGATTTTCGAACAGCTCACCATGGGAACTTGAAGGGTCATATGATGTCAAAACATTGGAAGGAAAAACCATTCAAATGTTCAAAGTGCCCTTTTAGAGCAACCCAGGCAGGGAATTTGCAATCCCACATTCGATCCAAACATACCTTTGAGAAGCCTTTCAAATGTGTTCACTGTGATTTTAGTTCAGCTCAAAGAGTTGGCCTGAAAGTTCATATACTAGGTAAGCACACTGCTGACAGGCCTCATACCTGTGATCAATGTAACTACTGTACTGCTAACCCTAGTAATTTAAGGATGCACATTTTGTCCAAACATACTATGGACAAACCATTTAAGTGTACAGAGTGTGATTATAGCACAATACATGCTTGTAACTTGAGAACTCATACTATGTCTAAACATTCATTGGAGCGCCCTCACAAGTGTAATGAGTGTTCTTATAGTTCTGCTCAGGCTATTTGTTTAAAGAACCATATTCTTTCAAAACATTCACATGAGAGACCTTTCAAATGTAATTTGTGTGACTACAGCTGTGTTCTTGCTGGTAATTTAAAGACTCACATTATGTCTAAACATTCAAATGAAAAGCCCTTTGCCTGTGAACTTTGTGATTTTAAAACTGCTTTCTCAGGCAATTTAAAGAATCATGTGTTGAATTGTCATACTTCAGAAAAAGCTCATACTTGTACTTTCTGTGAATTTGGTTCGGCTCATTTATCAGTTCTGAAACGCCATATTCTAATAAAACACACTGGTGAAAAACCTTACAAATGTTCAGAATGTGATTATGCCACAACATTTTCGGGAAACTTGAAAACTCATATCTCATCAAATCATTTAAATGAAAGAGCTCATCAGTGTCCCAGTTGTGATTATAAAGCTGCTCAAGCTTCAACATTAAAAAGCCATATTATGGCCAAACATACAAATGAGAAACCTTTTAAATGTGAACAATGTGATTATTCTACAACTCAATCAGGTAACTTGAAAACTCATATTTTATCAAAACACACTGATGAAAAACCGTATCAGTGTACTGAATGTGAATTTAAAACAGCTCATCCTACTAACTTGAGAACACATTTAATTTCAGCCCATTCAAAAGAAAAACCATTCAAATGTAGTGAATGTGATTACAGTTGTGTTCTAAGGACAAACATGAAATCACATATCATGGCTAGGCATACTAATGAGAAGCCATACAAGTGTCAGGATTGTGATTTTGCATGTGTGCAGCCAGGGAACCTCAAGTCACATGTGATGGCCAGGCACACTAAAGAGAGACCCCACCAGTGTCTTTTTTGTGATTATACCTCAGCTCAAGGATCTAGCTTGAAATCACATATAGTGGCAAAACATATGGAAGAAAAACCTTTTCAATGTCCACATTGTGACCATAAGACTGCTCATCAAGGGAACCTTAAAATCCATATCACAGCTAAGCACTCGACTGAAAAGCCACACAAATGCCAAGAATGTGATTTCAGTACTGCACACCAAGCTAATTTAAGAAGTCATTTCTTAAGTAAGCATTCATCTGAAAAACCTCACAAATGCCCTTTTTGTGAGTATAGTTGTGCTCAATCAGGAAACCTCAAAACACATATTATGGCCAAGCATACACATGAAAAACCATTCAAATGCTCTTTTTGTCATTATTGCTCCACACAAGCTGTAAGCCTTAAGTCACACATAATGTCAAGGCACACTCAAGAGCGCCCTTACCATTGCTTGTATTGTGACTACTGCACAGCCCATAGAAGTAATTTATCTACTCATATCAATAGTAAACATACTAATGAGTTTCCTGAATGGAATGTTGACCCTCTTTCTTCTGATGTTGAAAAACCTGAGAAAGCTGCTACTGAAAAGCCTGAAAAAGTGAAAAAAGATAAAAATTTCTCTTGTACTGAATGTTCATTTATTACCAAACATCATGCAAACTTAAAAAGTCATATTGCTGCAAGACATACTTTGGACAAGCCTTTTAAATGTAATGAATGTGATTACTCTGCTGCCCAGGCAGGTAACTTGAAATTTCATATGATGTCAAAGCATACAGATCAGAAACCATTTGCCTGTGAGATTTGTGAGTATAAAACTGCCTTTCCTGGGAATTTGAAAACACATATAAATTCAGTACATGTTCTTGAAAAGCCATTTCAATGTGAGCAGTGTGATTATAAAACTAGCCAGGCAAGTAGTCTCAAGTCTCATATGGTTGCAAAGCATACTGATGAAAAACCTTTTCAGTGTCCATTCTGTGAATACAGTGCAGTCCAATCTGGGAATCTGAAAAGTCACGTAATGAGTAAACACACTGGGGAGAAGCCTCATGAATGCCCTCATTGTGATTATAGAGCAACTCTCTTGAGCACCCTCAAGAATCACATAAATTCTATTCACACCAAGGAAAAGATATTCTCTTGCAATGAGTGTAATTTCACTTCAGCTCAACAAAGTTCTTTAAGATCTCATGTCATAGCTAAGCACACTGGGGAGAAACCTTATCAGTGTTCTCATTGTGAGTATTCAGCAGCCCAATCAGGTAACCTTAAGACACATATTATGTCTAAGCATACTGGTGAGAGGCCTTTTGCGTGTGAGCAGTGTGACTATAGAGCAACTCAAGCAAGTCAATTAAAAACGCACATTATGGCAAGGCATACAGATCTCAAACCTTTCAAGTGCCCACACTGTGAGCATAGGACTGCTCATTTTGCGAACCTTAAAATACACATAACAGCTGTTCACACTCTCAAACGACCTTACAAATGTGAAATATGTGAGTATGACACAGCTCATCCTGCCAACTTGAGGACTCACACTCTAGCAGTGCATAGTCTCAAGAAACCTCATCACTGTCCTCATTGTGAATATGCTACAGCTGTGAAAGGAAATCTAAAAACTCATATACAATCTGTTCATTGA
- Protein Sequence
- MKILKSHIKNMHLYQFGTSVKEPNYRVLREIHKNRKKAAERIKRFHCQLCDFRTAHHGNLKGHMMSKHWKEKPFKCSKCPFRATQAGNLQSHIRSKHTFEKPFKCVHCDFSSAQRVGLKVHILGKHTADRPHTCDQCNYCTANPSNLRMHILSKHTMDKPFKCTECDYSTIHACNLRTHTMSKHSLERPHKCNECSYSSAQAICLKNHILSKHSHERPFKCNLCDYSCVLAGNLKTHIMSKHSNEKPFACELCDFKTAFSGNLKNHVLNCHTSEKAHTCTFCEFGSAHLSVLKRHILIKHTGEKPYKCSECDYATTFSGNLKTHISSNHLNERAHQCPSCDYKAAQASTLKSHIMAKHTNEKPFKCEQCDYSTTQSGNLKTHILSKHTDEKPYQCTECEFKTAHPTNLRTHLISAHSKEKPFKCSECDYSCVLRTNMKSHIMARHTNEKPYKCQDCDFACVQPGNLKSHVMARHTKERPHQCLFCDYTSAQGSSLKSHIVAKHMEEKPFQCPHCDHKTAHQGNLKIHITAKHSTEKPHKCQECDFSTAHQANLRSHFLSKHSSEKPHKCPFCEYSCAQSGNLKTHIMAKHTHEKPFKCSFCHYCSTQAVSLKSHIMSRHTQERPYHCLYCDYCTAHRSNLSTHINSKHTNEFPEWNVDPLSSDVEKPEKAATEKPEKVKKDKNFSCTECSFITKHHANLKSHIAARHTLDKPFKCNECDYSAAQAGNLKFHMMSKHTDQKPFACEICEYKTAFPGNLKTHINSVHVLEKPFQCEQCDYKTSQASSLKSHMVAKHTDEKPFQCPFCEYSAVQSGNLKSHVMSKHTGEKPHECPHCDYRATLLSTLKNHINSIHTKEKIFSCNECNFTSAQQSSLRSHVIAKHTGEKPYQCSHCEYSAAQSGNLKTHIMSKHTGERPFACEQCDYRATQASQLKTHIMARHTDLKPFKCPHCEHRTAHFANLKIHITAVHTLKRPYKCEICEYDTAHPANLRTHTLAVHSLKKPHHCPHCEYATAVKGNLKTHIQSVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -