Ofas012978.1
Basic Information
- Insect
- Oncopeltus fasciatus
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold4242:17466-27950[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 6.8e-05 0.0042 17.5 4.1 1 23 51 73 51 73 0.97 2 33 0.033 2 9.1 2.1 1 23 79 101 79 101 0.97 3 33 3.5e-05 0.0022 18.5 1.6 1 23 107 129 107 129 0.98 4 33 0.00026 0.016 15.7 0.7 1 23 149 171 149 171 0.96 5 33 4.8e-05 0.003 18.0 2.5 1 23 177 199 177 199 0.98 6 33 0.05 3.1 8.5 3.5 1 23 205 227 205 227 0.98 7 33 0.00074 0.046 14.3 3.2 1 23 233 255 233 255 0.98 8 33 7.4e-05 0.0046 17.4 2.3 1 23 261 283 261 283 0.98 9 33 0.00012 0.0072 16.8 0.3 1 21 289 309 289 310 0.95 10 33 0.011 0.68 10.6 2.2 1 23 317 339 317 339 0.98 11 33 0.00096 0.059 13.9 3.0 1 23 345 367 345 367 0.96 12 33 1.9e-06 0.00012 22.4 2.2 1 23 379 401 379 401 0.97 13 33 0.00013 0.0081 16.6 2.1 1 23 407 429 407 429 0.97 14 33 0.00012 0.0075 16.8 4.4 1 23 435 457 435 457 0.97 15 33 0.00012 0.0074 16.8 1.1 1 23 463 485 463 485 0.97 16 33 0.0057 0.36 11.5 1.9 1 23 491 513 491 513 0.97 17 33 5.9e-05 0.0036 17.7 3.6 1 23 519 541 519 541 0.97 18 33 1.5e-07 9e-06 25.9 2.1 1 23 547 569 547 569 0.98 19 33 0.0077 0.48 11.1 2.6 1 23 577 599 577 599 0.98 20 33 0.00057 0.036 14.6 6.9 1 23 605 627 605 627 0.97 21 33 0.0069 0.43 11.2 0.3 1 23 633 655 633 655 0.97 22 33 3.4e-05 0.0021 18.5 1.6 1 23 661 683 661 683 0.98 23 33 6e-05 0.0037 17.7 2.5 1 23 689 711 689 711 0.99 24 33 0.011 0.67 10.6 0.1 1 21 717 737 717 738 0.94 25 33 0.028 1.7 9.3 2.6 1 23 745 767 745 767 0.98 26 33 6.7e-05 0.0042 17.6 0.5 1 21 773 793 773 794 0.95 27 33 0.085 5.3 7.8 3.0 1 23 801 823 801 823 0.97 28 33 3e-05 0.0019 18.6 0.7 1 23 829 851 829 851 0.97 29 33 0.00017 0.011 16.3 2.6 1 23 857 879 857 879 0.97 30 33 2.4e-05 0.0015 18.9 1.3 1 23 885 907 885 907 0.97 31 33 0.00017 0.011 16.3 2.6 1 23 913 935 913 935 0.97 32 33 9.5e-07 5.9e-05 23.4 1.2 1 23 941 963 941 963 0.98 33 33 4.8e-07 3e-05 24.3 1.8 1 23 969 991 969 991 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAAGTAGCTAGAAGAGATCACCTTATCTTGAGGGGCAATGGCGCTAAAGTCATTTGTGGAAGGGCATTTTTACTCGCTTTAGCGCGTCATGAAATTTACATGGAAATGAAGATTCATCTGTGCAAGCACACCGGCGAGCGTCCACACTCCTGCCCGTTCTGTGATTACAGCACAGCGAGGAAGGACCATCTGAAGATTCACATGAGCAAGCACACCAGCAAGCGTCCTTACTCCTGCCCTTTCTGTGATTATAGCGCAGCGAAGAAGTGCTACCTCAATATACACAAAGCTAAACATACAGGCGAGCGTCCATACTCATGTCATTTATGTGGTTATAGTACTGCTGATAAACGTGGCCTGAAGAAACACATTATCAAGCACACTGGCGAGCGTCCTTACTCCTGCTTGCACTGTGATTATAACATTAGCGAACGTCCTTACTTATGCCCTTGGTGTGATTATAATACAGCTAATAAGGGGCATATGAATAGGCACATGAGCATACACGCTGGAGAGCACCATTACTCCTGTCCCTCATGTGATTATATTACTTCAAATAAGAGCAATCTAAAGATTCATCTGTGCAAGCATACTGGCGAGAGTATTTACTCCTGCCTGTTCTGTGATTACAGCACATTGAGGAAGGACCATCTTAAGATTCATCTGTCCAAGCACACCGGCGAGTGTCCTTACTCCTGCTTGCACTGTGATTATAGTTCTGCTACTAAGACTGGCCTGAAAACCCACCTCAAGAAGCACACCGGTGAGCGTCCTTACTCCTGCTTACACTGTGATTATAGTTCTGCTACTAAGGGCAATCTGAAACTACACATGAGCAAGCACACCGGCGAGCGTCCTTACTCCTGCCCCTCATGTGATTACAGCACAGCAAGGAAGGTTAATTTGAAGACGCACATGAGCAGAAGCACTGGAAAGAGTTCTTACTCCTGTCCCTCATGTGCTTATAGTTCTGCAAGAAAGTGCGCTCTGAAGAAACACTTGAGCAAGCACATAGGCGAACGTCCACACTCCTGCCCATATTGCGATTATAGTTCTGCTACTAAGGCCTGTCTAAAGACCCACATAGGGAAGCACACCGGCGAGCGGAAGCACACCGGCGAGCGTCCACACTCCTGCCCATATTGCGATTATAGTTCTGCTACTAAGAGCAATCTGAAACTACACATTAGAAAGCACACCGGTGAGCGTCCACACTCCTGCCAATATTGCGATTATAGTTCTGCTACTAAGGGCAATCTGAAACTACACATTAGCAAGCACACCGGCGAGCGTCTACACTCTTGCGAATATTGCGATTATAGTTCTGCTAATAAAGGCCATCTGAAACAACACATGAGCAAGCACACCGGCGAGCGTCCACACTCCTGCCCATATTGCGATTATAGTTCTGCTACTAAGGGCGTCCTGAAACTACACATTAGAAAGCACACCGGTGAGCGTCCACACTCCTGCCAATATTGCGATTATAGTTCTGCTACTAAGGGCATCCTGAAACTACACATTAGAAAGCACACCGGCGAGCGTCCACACTCCTGCCCATATTGCGATTATAGTTCTGCTACTAAGGGCCATCTGAAACTACACATGAGCAAGCACACCGGCGAGCGTCCTCACACCTGTCCCGAATGTGATTATAGTTCTGCTGATAAAAGTAATTTGAAGAGACATATGAGGAGACACACTGGCGAGTGTCCATATATTTACTCCTGCCTGTTCTGTGATTACAGCACAGCGAGGAAGGATGTTCTGAAGATTCATCTGTGCAAGCACACCGGCGAGCGTCCACACTCCTGCCCGTTCTGTGATTACAGCACAGCGAGGAAGCACCATCTGAAGATTCACATGAGCAAGCACACCGGCAAGCGTCCTTACTCCTGCCCTTTCTGTGATTACAGCACAGCTATTAAGGGTAATCTTTATATACACAAAGCTAAACATTCAGGCGAGCGTCCATACTCATGTCATTTATGTGGTTATAGTACTGCTGATAAATTTGCCCTGAAGAAACACATTATCAAGCACACCGGCGAGCGTCCTTACTCCTGCCCGCACTGTGATTATAGTTCTGCTACTAAGGCTCGTCTGAAGACCCACCTCAGGAAGCACACCGGCGAGCGTCCTTACTCCTGTCCCTCATGTGATTACAGCACAGCATGGAAGGATAATTTGAAGAGGCACTTGAGCATAAACACTGGAAAAAGCTCTTACTCCTGTCCCTCGTGTGCTTACAGTTCTGCTAGAAAGTGCGTTCTGAAGAAACACATGAGCAAGCACACCGGCGAGCGTCCTTACTCCTGTCTCTACTGTGATTACAGCACAGCAAGGAAGGGTCATTTGGAGAAGCACATGAGCATAAACACTAGACAGAGCTCTTACTTCTGTCCCTCATGTGCTTATAGTTCTGCTAGAAAGTGCGTTCTGAAAAAACACATGAGCAAGCACACCGGTGAGCGTTCACATTCCTGCCCATATTGCGATTATAGTTCTGCTAATAAGGGCAATCTGGAATTACACATTAGCAAGCACACCGGCGAGCGTCCACACTCCTGCCAATATTGCGATTATAGTTCTGCTACTAAAGGCCTTCTGAAACAACACATGAGCAAGCACACCGGCAAGCGTCCACACTCCTGCCCATATTGCGATTATAGTTCTGCTACTAAGGGCAATCTGAAACTACACATTAGCAAGCACACCGGCGAGCGTCCACACTCCTGCCAATATTGCGATTATAGTTCTGCTACTAAAGGCCTTCTAAAACAACACATGAGCAAGCACACCGGTATGCGTCCATACACCTGCCCATATTGCGATTATAGTTCTTCTACTAAGGGCAATCTGAAACTACACATGAGCAAGCACACCGGCGAGCGTCCTTACTCTTGTCTCTACTGTGATTATAGTTCTGCTGATAAAAGTAATCTGAAGAGACATATGAGGAGACACACTGGCGAGTGTCCATAG
- Protein Sequence
- MEEVARRDHLILRGNGAKVICGRAFLLALARHEIYMEMKIHLCKHTGERPHSCPFCDYSTARKDHLKIHMSKHTSKRPYSCPFCDYSAAKKCYLNIHKAKHTGERPYSCHLCGYSTADKRGLKKHIIKHTGERPYSCLHCDYNISERPYLCPWCDYNTANKGHMNRHMSIHAGEHHYSCPSCDYITSNKSNLKIHLCKHTGESIYSCLFCDYSTLRKDHLKIHLSKHTGECPYSCLHCDYSSATKTGLKTHLKKHTGERPYSCLHCDYSSATKGNLKLHMSKHTGERPYSCPSCDYSTARKVNLKTHMSRSTGKSSYSCPSCAYSSARKCALKKHLSKHIGERPHSCPYCDYSSATKACLKTHIGKHTGERKHTGERPHSCPYCDYSSATKSNLKLHIRKHTGERPHSCQYCDYSSATKGNLKLHISKHTGERLHSCEYCDYSSANKGHLKQHMSKHTGERPHSCPYCDYSSATKGVLKLHIRKHTGERPHSCQYCDYSSATKGILKLHIRKHTGERPHSCPYCDYSSATKGHLKLHMSKHTGERPHTCPECDYSSADKSNLKRHMRRHTGECPYIYSCLFCDYSTARKDVLKIHLCKHTGERPHSCPFCDYSTARKHHLKIHMSKHTGKRPYSCPFCDYSTAIKGNLYIHKAKHSGERPYSCHLCGYSTADKFALKKHIIKHTGERPYSCPHCDYSSATKARLKTHLRKHTGERPYSCPSCDYSTAWKDNLKRHLSINTGKSSYSCPSCAYSSARKCVLKKHMSKHTGERPYSCLYCDYSTARKGHLEKHMSINTRQSSYFCPSCAYSSARKCVLKKHMSKHTGERSHSCPYCDYSSANKGNLELHISKHTGERPHSCQYCDYSSATKGLLKQHMSKHTGKRPHSCPYCDYSSATKGNLKLHISKHTGERPHSCQYCDYSSATKGLLKQHMSKHTGMRPYTCPYCDYSSSTKGNLKLHMSKHTGERPYSCLYCDYSSADKSNLKRHMRRHTGECP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -