Basic Information

Insect: Oligia strigilis
Gene Symbol: -
Assembly: GCA_951800025.1
Location: OX637570.1:318535-320989[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.5e-05 0.0072 17.7 0.0 2 23 192 213 191 213 0.96

2 11 0.0001 0.0096 17.3 0.5 1 23 220 242 220 242 0.97

3 11 0.056 5.3 8.7 1.2 1 23 247 269 247 269 0.88

4 11 0.0012 0.11 14.0 2.7 1 23 275 296 275 296 0.98

5 11 0.0012 0.12 13.9 0.1 2 23 302 323 301 323 0.96

6 11 0.21 20 6.9 1.3 1 23 327 349 327 349 0.96

7 11 0.0038 0.36 12.4 2.5 2 23 356 377 355 377 0.97

8 11 0.00044 0.042 15.3 1.6 1 23 383 405 383 405 0.97

9 11 0.028 2.7 9.7 7.4 1 23 411 433 411 433 0.98

10 11 0.00065 0.062 14.8 0.3 1 22 439 460 439 462 0.90

11 11 0.062 6 8.5 4.4 2 19 469 486 468 492 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.5e-05	0.0072	17.7	0.0	2	23	192	213	191	213	0.96
2	11	0.0001	0.0096	17.3	0.5	1	23	220	242	220	242	0.97
3	11	0.056	5.3	8.7	1.2	1	23	247	269	247	269	0.88
4	11	0.0012	0.11	14.0	2.7	1	23	275	296	275	296	0.98
5	11	0.0012	0.12	13.9	0.1	2	23	302	323	301	323	0.96
6	11	0.21	20	6.9	1.3	1	23	327	349	327	349	0.96
7	11	0.0038	0.36	12.4	2.5	2	23	356	377	355	377	0.97
8	11	0.00044	0.042	15.3	1.6	1	23	383	405	383	405	0.97
9	11	0.028	2.7	9.7	7.4	1	23	411	433	411	433	0.98
10	11	0.00065	0.062	14.8	0.3	1	22	439	460	439	462	0.90
11	11	0.062	6	8.5	4.4	2	19	469	486	468	492	0.92

Sequence Information

Coding Sequence: ATGGCAAGCAGAATACTATTTGTACAGGAAACTAATAACCAAATTGGAATTAAAACTAACAGACCTGAATTAAATGATGTGGTAACAATAAAAGAAGAGGGTCCAATAGATGAGGTTATCAGCAATTCAGATTCTATTCAAGGAAAAGAAAACCAGGATTTTACAGGAACAAATTCTGACACAGTTAATAGTATTGAACCTCCTAACAAAGATAATCAAATAGAAAATGTCATCTATCTGGGCAGTcgaaaaaaaagttatgaaaaTCTAATTGAGCAAGAGGGTAACATTGCTCAAAGTGAGGGTAACATTGCTCAAGGTGAGGGTAATATTGTTCAAAGTGGGGGTAACGTTACCATAGTTCAAGGGGGTAAGGGtaagagaaaaaataaaactgagcTAGATTTCCTCAGTATAGAAATGAAGAATTATAAAGTTGAATATGATATGTTTGGAGATAAAAGTAAAAGATTCAGAAAGTCTATATTGAAACCTGAGCAAATAATTTCATACGAGGAACCATTAGACCACAAACCCCAACGCCACTTCAGTACAGATGAAGAAACGGACTTGATCTGCCCCGTTTGCCAGCAAGAGTATGAAAACAAAGTAGCATTACAAAATCACATCCGAATCCACAACAAAACTGTACAGAATTACACCTGCTCGCTATGCTCCAAGAAATTCGAGAAAAATGCAGACCTAATAGCCCACAGAGAGCAGCATAACAGAGAGTCCTTTCTCTGCCAAGAATGCAAACTAGCATTCTCCAACTACCGTGACTATCGACTACACAACTATGAGCATTTGAGTCAGCCACATTTCTACTGCTCAGAATGTGGACTGCGCTATCGAAAATCGTTCTACAAACAACACATTATGACACATTTTGAAAACCTACTGTCCTGCAATATATGCCCTTTCGTTACCAACGGCGAATACAATCTACGGGCTCATATAAATCtgcacaaacacaaatttgcATGCGTAGAGTGCGGAAAAGAGAGCAACTGCAAAAAAGATTATGAATATCATATGAGTATACATACTGGGGTTAAGAGGATACAGTGTCTTTACTGTGGAGCATGTTTCCGCAACCAACACGCGAGGGATGTGCACACCAGGATACACACAGGCGAAAAACCTTTTACGTGTGACATTTGTGGGCATAAATCCCGGCAATGGACAGATATGAAACGACATGAAGAGAGTCATGCCACTGAGAAAAAGTACTGCTGTGATTTGtgtggaaaaaaatatttgcacaAATGCTATCTTGTGGTTCATATGCGGTCTCATACAAAGAAGACTCTGTATGAGTGTCCTGAGTGTGATGCTAAGTTTGTCAGTGTAAGTGGGTTGAAGACTCATTCACTGTTTAAGCATACGAGTGAGCGGCCTGTAGAGTGTACGCtttgtaataaaaactttatcaaCCATAATCAGTATCAGAAACATTGTAGAGCGAAGTATCATTTAAGAAATTTGTATGGGAATAAGGTtgataataaaaagaaagatgAATGA
Protein Sequence: MASRILFVQETNNQIGIKTNRPELNDVVTIKEEGPIDEVISNSDSIQGKENQDFTGTNSDTVNSIEPPNKDNQIENVIYLGSRKKSYENLIEQEGNIAQSEGNIAQGEGNIVQSGGNVTIVQGGKGKRKNKTELDFLSIEMKNYKVEYDMFGDKSKRFRKSILKPEQIISYEEPLDHKPQRHFSTDEETDLICPVCQQEYENKVALQNHIRIHNKTVQNYTCSLCSKKFEKNADLIAHREQHNRESFLCQECKLAFSNYRDYRLHNYEHLSQPHFYCSECGLRYRKSFYKQHIMTHFENLLSCNICPFVTNGEYNLRAHINLHKHKFACVECGKESNCKKDYEYHMSIHTGVKRIQCLYCGACFRNQHARDVHTRIHTGEKPFTCDICGHKSRQWTDMKRHEESHATEKKYCCDLCGKKYLHKCYLVVHMRSHTKKTLYECPECDAKFVSVSGLKTHSLFKHTSERPVECTLCNKNFINHNQYQKHCRAKYHLRNLYGNKVDNKKKDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00925169;
90% Identity: iTF_01093474;
80% Identity: -