Ostr033133.1
Basic Information
- Insect
- Oligia strigilis
- Gene Symbol
- -
- Assembly
- GCA_951800025.1
- Location
- OX637570.1:4513131-4519777[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.01 0.97 11.0 0.9 1 23 90 113 90 113 0.95 2 20 3.5 3.3e+02 3.0 0.1 2 23 141 163 140 163 0.90 3 20 2.3 2.2e+02 3.6 2.6 2 23 186 209 185 209 0.88 4 20 0.0018 0.17 13.4 0.6 1 23 213 235 213 235 0.96 5 20 1.6 1.6e+02 4.1 2.6 1 23 240 263 240 263 0.94 6 20 0.0051 0.49 12.0 1.1 1 23 349 372 349 372 0.95 7 20 1.2 1.1e+02 4.5 0.2 2 23 400 422 399 422 0.92 8 20 2.3 2.2e+02 3.6 2.6 2 23 445 468 444 468 0.88 9 20 0.00074 0.07 14.6 0.2 1 23 472 494 472 494 0.96 10 20 4.4 4.2e+02 2.7 1.4 1 23 499 522 499 522 0.86 11 20 0.022 2.1 10.0 2.5 1 23 597 620 597 620 0.94 12 20 0.14 13 7.5 0.2 2 23 647 669 646 669 0.96 13 20 0.0032 0.31 12.6 2.3 2 23 692 713 691 713 0.96 14 20 0.00021 0.02 16.3 0.2 1 23 717 739 717 739 0.95 15 20 0.022 2.1 10.0 0.8 1 23 744 767 744 767 0.96 16 20 0.0021 0.2 13.2 1.4 1 23 774 797 774 797 0.95 17 20 0.00048 0.046 15.2 0.7 3 23 806 827 805 827 0.96 18 20 0.00026 0.025 16.0 3.1 1 23 833 855 833 855 0.97 19 20 4e-05 0.0039 18.6 1.4 1 23 861 883 861 883 0.99 20 20 0.012 1.2 10.8 7.6 1 23 889 912 889 912 0.98
Sequence Information
- Coding Sequence
- ATGAGAATATTAGTGCTAAAGAACTTGACCAATAACTTAGCAATTTTCTTTATAGATGAACAAGAAAAAGTGGCTACAGCTACGAAAATCAAAATAGAGCCGACAGCTGAAGAAACTGTAGTACCTCAGGAAgggcatataaaaataaatccagAGACAGCGCCTCGACCACGCATAAAGCGACTACTGCACAAGCATCTACACAATCTGAAAATAATCCTAGAATCTACTAACGCCACGATGATACTCAAACATGGAGATAAGGGATATTTGTGCTGCTATTGCACGGAAGCTTTCCAAGAACCCATGAATTTGAAAGTACACACTTTAACGGAACATCAAAATGCAGAAAAGTTCTATGGCAACATCAAAGCCAGAGGGCCCTCTAGGTTCTTAGTCAAGCTTGACATCACAAACCTAAAATGCAAGCTTTGCAGCGCCAATATAGACTCTCTCGAAGATCTATTCGTCCATCTGACAGGGAAACATAATAAGAACTTCCACAATGatataaaaaatcaaatatttcctTTCAAGTTCAATGCAAAGGATCTGAAATGCTATCAATGTACTAGTGACGTCGTTTTCGCCACGTTCAGCGCATTACACGAGCATATGCACAAGCACTACCGATACTTCGTTTGTAACGAGTGTGATGCCGGATTCATCAATCATGAAACATTATCCAAACATAACGTTACTCACACGAAAGGGTCATTCGTCTGCCGACATTGTTCTGTTGTATTCGACAACGTGTTCAAGAGAAGAAACCACGAGATGCGCAGCCATACTCATACTGACAAATCATATTTATGCCATTTATGCAATGAAGATAAACAAGAAAAAGTGGCTACAGCTAAAGAAATCAAAGTAGAGCGCAAAGCTGAAGAATCTGTAGTACTTCAGGAacagcaaataaaaataaatccagAGACAGCGCCTCGACCACGCATAAAGCGACTACTGCACAAGCATCTACACAATCTGAAAATAATCCTAGAATCTACTAACGCAACGATGATACTCAAACATGGAGATAAGGGATATTTGTGCTGCTATTGCACGGAAGCTTTCCAAGAACCCACGAATTTGAAAGTACACACTTTAACGGAACATCAAAATGCAGAAAAGTTCTATGGCGACATTAAAGCCAGAGGACCCTCTAGGTTCTTAGTCAAGCTTGACATCACGAACCTAAAATGCAAGCTTTGCAGCGCCAATATAGACTCTCTCGAAAATCTATTCGTCCATCTGACAGAGAAACATAATAAGAACTTCCACACAGATATACAAAATCAAATATTTCCTTTCAAGTTCAATGCAAAGGAACTGAAATGCTATCAATGTACTAGTGACGTCGTTTTCGCCACGTTCAGTGCATTACACGAGCATATGCACAAGCACTACCGATACTTTATTTGTAATGAATGTGATGCTGGATTCATCAATCATTATTCATTATCCAGTCATATAGTCATTCACACGAAAGGAACCTTCGCTTGCCGACATTGTTCTGTTGTATTCGACAACGTATTCAAGAGAAGAAACCACGAGATGGGCAGCCATAAGAAACCtggcaaattaaataaatgccATTTCTGCAATGAAGGTGGTCAACAAAGAAGTGTTGAGGAAATAGAAACGAACGGCAATGACCTTACAGAAAATATAGATGAAaaagaactaaaaataacaccCAGGACCGAACTATTAAAACATCGAAGTAATATTAAAGAAGTCCTTCTTAATTCTAACGCAACGCCTGTAAGACGGTACGGAGGGATCGGATACACGTGCTGCTACTGTCCAGACCAGTTCGAACACCCTGCGGACCTTAAGAAACATACTCTAGCGAACCACAGAAATGTCTCAGAAGCAAACTTTATGAAGAACATGAACATGTCCGAATATATCGTCAAATTAGATATAACTTCATTGAAATGCAAGCTTTGCGACAGTAATATGAATACTCTAGATAACTTAATAGACCATCTTCAAAGCGTACATGAGAAAAAAATCGACAAGGATCATGTAAACCATATCTTTCCTTTCAAATTCGGCAACGATTTACTGATATGCAATATTTGCTCGAACACTTTTAGTAAGTTCAGGACCCTTGTTAGACATATGCATATTCATTACAGGAATTATATTTGCACCGTTTGCGACACCGGATTCGCCAACCGCAACTCATTAACACAACATTTAGTTAATCACAAAACAGGGGCATTTGCTTGTGACTACTGTCCAAAATTCTATCCTACTCTTGTAAAAAAACGAATGCACGAAAGAACATCCCACACACACGTAGACGCTACTTATAAATGTGGTTATTGTCAAGAAACTTTTAAAGATCATGGACAAAAGGAAGCTCATGTAACTTCGGAACATGGAGTGGTATCATTGAAAAGTCTATGTCAAGCTTGCAACAAAGTATTTCCCAATAGGAAGAAACTTAACATACACATTAAAAGAGACCATCTAATGGAGAGGCCACACAAATGTAAGGAGTGTGATATGTCGTTTTATTCCACGACAGGGTTAAAAAGTCATATGGTCAAGCATACAGGGTTGAAAGAATTTCAGTGCTCAGTATGTCTGAAGAAATATGGAAGAAAGAAGACACTGAATGCTCACATGCTGACACATTCTGAGGAGAAGAGGTTCAAATGTGAAAAATGTGAGCATAAATTTACGCAGAAATGTACTTGGAGAGGACATATGAGATCCAAACATGGAGaaattgtttaa
- Protein Sequence
- MRILVLKNLTNNLAIFFIDEQEKVATATKIKIEPTAEETVVPQEGHIKINPETAPRPRIKRLLHKHLHNLKIILESTNATMILKHGDKGYLCCYCTEAFQEPMNLKVHTLTEHQNAEKFYGNIKARGPSRFLVKLDITNLKCKLCSANIDSLEDLFVHLTGKHNKNFHNDIKNQIFPFKFNAKDLKCYQCTSDVVFATFSALHEHMHKHYRYFVCNECDAGFINHETLSKHNVTHTKGSFVCRHCSVVFDNVFKRRNHEMRSHTHTDKSYLCHLCNEDKQEKVATAKEIKVERKAEESVVLQEQQIKINPETAPRPRIKRLLHKHLHNLKIILESTNATMILKHGDKGYLCCYCTEAFQEPTNLKVHTLTEHQNAEKFYGDIKARGPSRFLVKLDITNLKCKLCSANIDSLENLFVHLTEKHNKNFHTDIQNQIFPFKFNAKELKCYQCTSDVVFATFSALHEHMHKHYRYFICNECDAGFINHYSLSSHIVIHTKGTFACRHCSVVFDNVFKRRNHEMGSHKKPGKLNKCHFCNEGGQQRSVEEIETNGNDLTENIDEKELKITPRTELLKHRSNIKEVLLNSNATPVRRYGGIGYTCCYCPDQFEHPADLKKHTLANHRNVSEANFMKNMNMSEYIVKLDITSLKCKLCDSNMNTLDNLIDHLQSVHEKKIDKDHVNHIFPFKFGNDLLICNICSNTFSKFRTLVRHMHIHYRNYICTVCDTGFANRNSLTQHLVNHKTGAFACDYCPKFYPTLVKKRMHERTSHTHVDATYKCGYCQETFKDHGQKEAHVTSEHGVVSLKSLCQACNKVFPNRKKLNIHIKRDHLMERPHKCKECDMSFYSTTGLKSHMVKHTGLKEFQCSVCLKKYGRKKTLNAHMLTHSEEKRFKCEKCEHKFTQKCTWRGHMRSKHGEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -