Basic Information

Insect: Oligia strigilis
Gene Symbol: -
Assembly: GCA_951800025.1
Location: OX637558.1:4705907-4709160[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0004 0.039 15.4 2.7 2 23 164 185 163 185 0.98

2 7 1.2e-06 0.00011 23.4 1.5 1 23 191 213 191 213 0.98

3 7 9.3e-05 0.0088 17.4 0.0 2 23 220 241 219 241 0.97

4 7 1.8e-05 0.0017 19.7 3.1 1 23 247 269 247 269 0.98

5 7 1.4e-07 1.3e-05 26.3 0.4 1 23 275 297 275 297 0.98

6 7 0.00055 0.053 15.0 6.9 1 23 303 326 303 326 0.94

7 7 9e-07 8.6e-05 23.8 1.0 1 23 331 353 331 353 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0004	0.039	15.4	2.7	2	23	164	185	163	185	0.98
2	7	1.2e-06	0.00011	23.4	1.5	1	23	191	213	191	213	0.98
3	7	9.3e-05	0.0088	17.4	0.0	2	23	220	241	219	241	0.97
4	7	1.8e-05	0.0017	19.7	3.1	1	23	247	269	247	269	0.98
5	7	1.4e-07	1.3e-05	26.3	0.4	1	23	275	297	275	297	0.98
6	7	0.00055	0.053	15.0	6.9	1	23	303	326	303	326	0.94
7	7	9e-07	8.6e-05	23.8	1.0	1	23	331	353	331	353	0.99

Sequence Information

Coding Sequence: atgactgcGAATATTTGTAGAGTTTGTTTAAATCAAGAATTATtagtaaatatatttaaaaagtcAGGATTTCTTACGATACCTACGAAATTAATGTCTATTGCGAAAGTACACgtagCACCTGAAGATGGCCTTCCAGACGCAATTTGTTCAAAATGTGTCCAAAAACTAGATGACTGTATAGAATTTATTGAGCTATGTGAAACATCTGATGTAAAACTGAGGGCCTTATTAGAAAATAACTGTTTGGAGAACAAATTGATGATGGACAATAGCATAGAAAATGATAACTTCTTATCGGACAATGATACTTCATTATCACTTAAAAGTGAGACAGAACAAGTGCTGTTTATTGATGAAAGTATAGATCATAGTATTATGGACCATACAACTTTAACTGATGATCTGttggaaaatgaaacaattatggatacaaaaaaagaaaatatcaatcattcaaaattaataaataagaagACTCGGAAACAACAATGCTTCACTTGTGGAAAAGTTATGTCATCGAGATTTCGCCTCAAGACGCACATGCGGACACACACGGGAGAGCGGCCATATTCCTGTCCACATTGCAGTAAGAACTTCTCATTAGCACAGAACTTGAAAGTGCATCTGAGAATACATACAGGAGAGAAACCTCTGCAATGTCCAATATGTGGAGATGCATTTGCTCAGTCAGCAGGTTTGGCAGCACACAAACGCAAGCACTCGGGTGTACTGCCATATGACTGTAAGCTGTGTCCGCGCTCTTTCCGAACTATCGGACACTTACAGTACCACACACGGCGACACACTGGCGAAAAGAACTTCGAATGTGACACTTGTGGTCGAGCCTTTATCACTCGCAGCGATTTAAAACAGCACTTGCTCACGCACACCGGAGCCCGACCCCATGTCTGCTGTATCTGCGGACTGCGGCTCACCCGCGCCTCACACCTTAAGAGACACATGCATCTTACCCACGAAAAAACTGTATACTCCTGTGATCACTGCCCAGcggaatttgtaaaaaaaagcgAGTTAGAAAAGCATATTAAAACTCATGACGATTAg
Protein Sequence: MTANICRVCLNQELLVNIFKKSGFLTIPTKLMSIAKVHVAPEDGLPDAICSKCVQKLDDCIEFIELCETSDVKLRALLENNCLENKLMMDNSIENDNFLSDNDTSLSLKSETEQVLFIDESIDHSIMDHTTLTDDLLENETIMDTKKENINHSKLINKKTRKQQCFTCGKVMSSRFRLKTHMRTHTGERPYSCPHCSKNFSLAQNLKVHLRIHTGEKPLQCPICGDAFAQSAGLAAHKRKHSGVLPYDCKLCPRSFRTIGHLQYHTRRHTGEKNFECDTCGRAFITRSDLKQHLLTHTGARPHVCCICGLRLTRASHLKRHMHLTHEKTVYSCDHCPAEFVKKSELEKHIKTHDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00667813;
90% Identity: iTF_00122701;
80% Identity: -