Ostr004809.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oligia strigilis
Gene Symbol
-
Assembly
GCA_951800025.1
Location
OX637540.1:28082392-28100379[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00087 0.083 14.4 4.9 1 23 393 415 393 415 0.98
2 11 9.9e-05 0.0094 17.4 1.5 1 23 421 443 421 443 0.98
3 11 0.00011 0.011 17.2 1.7 1 23 449 472 449 472 0.96
4 11 0.048 4.6 8.9 3.3 1 21 478 498 478 500 0.95
5 11 0.0011 0.11 14.0 3.8 1 23 506 528 506 528 0.99
6 11 2.3e-05 0.0022 19.3 5.3 1 23 534 556 534 556 0.98
7 11 0.0052 0.5 11.9 0.9 1 23 564 587 564 587 0.97
8 11 0.028 2.7 9.6 4.3 2 23 594 615 593 615 0.96
9 11 5.1e-05 0.0049 18.3 2.8 1 23 621 643 621 643 0.99
10 11 5.7e-06 0.00054 21.3 1.6 1 23 649 672 649 672 0.96
11 11 4.9e-05 0.0046 18.3 6.0 1 23 686 708 686 708 0.97

Sequence Information

Coding Sequence
ATGACTTATGACGTTACTTTGATGGATCATGTTGTTGACCACATACCATTAGCCTGGCCGCCAGGCCTTCCTGTCCCAATTAAAGACGAGCCTCTGGAACTGTCGGCGGACCAGGAACACCTGGTAAGTGTCGACAGCGAGAAGTACTCAAACGCAGACCCAGACCTCATCACCTATAAGCAAGATTTTTGGCACGAGCGCCAGGCGAGCCTTTCAAGCCCAAGCAGTGAGGAGGACTCAAACCCAGGCCCTATCAACTACAATCAAGAGATTTGGAACGAGCCCGAAATCCAGGCGAGCCTGACAAGCCCAGGCAACGAGGAGGACTCACTCCTAGACCCCGTCATTCAGGGTGACCTTTTTTGGAAAGAGCCCGCGCGCCAGGCGAGCCTGGAAAGTCCGGGCAGTGTGGCAGACCCAAACAAGAACACAGGATCTTCGAAACCTTATTTGGTAATTACCCCTCAGGGGGAGATAGTTGAAGAAACTCTAGAGAACGCACCTATCAAGAAGAACAttcatataaaaaagaaaatctggATTGTTCCGAACAAGAAAATAATTGAAGAAGAGGAGGTAAGCCAGGAGAGCCTGGCTAGTCAAGATTGCGCGGAAAAAGATAACCTGAAAGAAGATAAAAAAAGCTTGatagaaaaaccaaccatgccACTTCCAGATAAAAACGAGCAGACCAAGCAAACATACCAAGGATCGGTCATCGCAGTAAATGCCGCAACTGACGAAGAGGGCTTGCCCGCGGGGATGGTCGAGTACTACGTAGACCAAGACGGCAAGTACTACTACCAATCGGCGGTCGAAGGAGAGGACGTAGACATGGATAATTCCGAAGACAACCAAGAAACTGAGGAGGTGGTCGGTGAAGGTTCGGAACCGACACTTACCGATCAGGAGGAAACTTACCAGACGGTCACGTTGGTCCCTTCTGAGACCAACGGGGAGGTTAGCTACGTGCTGGTGGTGCAAGACGAGGCCAAGGGGGTCGTCAACATCGATCTCAAGATGGACCAGTCCGAAGCGGAGGAGAAAGGAAACGATGACGTGTACACCTTTGAGGACGAGGAGGCCGGCGAGGAGGAGGAGGAAGAGGAAGAGGAGATTCCCGACGGCAGGCCCAAGACCACGCAGAAGCGAAACCTCGCGCACATGCGACCTAACTACAACTGTAACTTCTGCGACTACACCAGTCATCGCAGGTACCTTCTGCTGCGCCACATGAGGTCGCACTCGGAGGACCGTCCGCACAAGTGTACCGTGTGCGAGCGCGGCTTCAAGACCATGGCCTCGCTGCAGAACCACGTCAACATGCACAACGGCATCAAGCCGCACGTCTGCAAGTACTGCAACAGCCCCTTCACCACCTCGGGCGAGCTGGTCCGCCACGTGCGCTACAAGCACACGCACGAGAAGCCGCATAAGTGCACGGAGTGCGACTACGCCTCCGTCGAGCTGTCCAAGCTGCGCCGCCATGTCCGCTGCCATACCGGCGAGAGACCCTACCAGTGCCAGCACTGCACCTACGCATCCCCGGATACATTCAAGCTGAAGCGCCACCTGCGCACGCATACCGGCGAGAAGCCCTACAAGTGCGAACACTGCAATATGTGTTTCACACAGTCGAACTCGCTGAAGGCCCACCGGCTCATCCACAACGTATCTGAAAAGCCGGTGTACTCGTGCGAGCTCTGCCCTGCCAAGTGTGGCCGTAAGACGGACCTGCGCATCCACGTGCAGAAGCTGCACACTTCTGACAAGCCGCTGAAGTGTCGCCGCTGTGGCAAGTCCTTCCCCGATCGCTACTCGTGCAAGGTGCACAACAAGACCCATGAGGGAGAGAAGTGCTACAAGTGCGACCTGTGCCCGTACGCGTCGACCACGCAGCGCCATCTTAAGACGCATATGCTGAAGCACACCGATGAGAAGCCGTTCGTCTGTGACCTGTGTGATCAGTCATTCAGGCAGAAGCAGCTGCTCCGTCGCCACCAGAACCTGTACCACAACCCAAACTACGTGCCCAAGCCGCCGAAGGAGAAGACGCACTCTTGCCACGAGTGCCACCGCATGTTCGCCCACAAGGGCAACCTGATCCGCCACTTGGCCGTGCACGACCCGGAGTCTGGACACCACGAGCGTGCGCTCGCCCTCAAGATCGGGCGCCAGAGGAAGGTGCGATTTGTCGAGGGAGAGCCTATGCCTAACCTCCGCGTCCTGGACTCTGCTGACTCTGAGAACATGATTAAGCTGGGTCTCACCAAGAACGACCTGAAGCGCGGCGAGCTGGTGACTGTGGGCGACGGCGACGGCCAGCAGTACGTGGTGCTGGAGGTCATTCAACTGGAGGACGGCACTGAGCAGCAAGTCGCCGTCGTGGCTCCGGAGTACAACATGGACGAGGATGAAGCcgAAGAGGACGAGGAAGAGGAGGAAGAAGATGAGGACGAGGAAGAGGAAGGCGAGGACAGGAGCTTTGTGGTGAAGGAGTCCACTGTCACATCCACTAGCATCAAACTCGAAAAGGAGGTCGACACATGCTTCGGATTCGATGATGAAGAAGAAGAGGATCCCGAAGATGAGAATTACACGGACAAAGTTGTGCTGAGCCTAGTTTAG
Protein Sequence
MTYDVTLMDHVVDHIPLAWPPGLPVPIKDEPLELSADQEHLVSVDSEKYSNADPDLITYKQDFWHERQASLSSPSSEEDSNPGPINYNQEIWNEPEIQASLTSPGNEEDSLLDPVIQGDLFWKEPARQASLESPGSVADPNKNTGSSKPYLVITPQGEIVEETLENAPIKKNIHIKKKIWIVPNKKIIEEEEVSQESLASQDCAEKDNLKEDKKSLIEKPTMPLPDKNEQTKQTYQGSVIAVNAATDEEGLPAGMVEYYVDQDGKYYYQSAVEGEDVDMDNSEDNQETEEVVGEGSEPTLTDQEETYQTVTLVPSETNGEVSYVLVVQDEAKGVVNIDLKMDQSEAEEKGNDDVYTFEDEEAGEEEEEEEEEIPDGRPKTTQKRNLAHMRPNYNCNFCDYTSHRRYLLLRHMRSHSEDRPHKCTVCERGFKTMASLQNHVNMHNGIKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCQHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHRLIHNVSEKPVYSCELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKVHNKTHEGEKCYKCDLCPYASTTQRHLKTHMLKHTDEKPFVCDLCDQSFRQKQLLRRHQNLYHNPNYVPKPPKEKTHSCHECHRMFAHKGNLIRHLAVHDPESGHHERALALKIGRQRKVRFVEGEPMPNLRVLDSADSENMIKLGLTKNDLKRGELVTVGDGDGQQYVVLEVIQLEDGTEQQVAVVAPEYNMDEDEAEEDEEEEEEDEDEEEEGEDRSFVVKESTVTSTSIKLEKEVDTCFGFDDEEEEDPEDENYTDKVVLSLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00123629;
90% Identity
iTF_00925093;
80% Identity
-