Basic Information

Insect: Oligia strigilis
Gene Symbol: -
Assembly: GCA_951800025.1
Location: OX637557.1:11760515-11776751[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.33 32 6.3 0.4 6 20 12 26 6 28 0.86

2 13 0.084 8 8.1 0.4 2 20 34 52 33 54 0.93

3 13 0.79 76 5.1 0.5 1 12 213 224 213 233 0.83

4 13 4.8 4.6e+02 2.6 0.1 1 19 371 389 371 389 0.96

5 13 0.00024 0.023 16.1 0.4 1 23 396 418 396 418 0.98

6 13 0.00041 0.039 15.4 0.6 1 23 432 454 432 454 0.97

7 13 2.9e-05 0.0028 19.0 0.7 3 23 508 528 506 528 0.96

8 13 0.00088 0.085 14.4 2.3 1 23 544 566 544 566 0.98

9 13 1.6e-06 0.00016 23.0 4.5 1 23 572 594 572 594 0.98

10 13 0.0006 0.057 14.9 5.2 1 23 600 622 600 622 0.97

11 13 1e-05 0.00097 20.5 0.4 1 23 628 650 628 650 0.98

12 13 0.00049 0.047 15.2 1.1 1 23 654 676 654 676 0.98

13 13 0.00022 0.021 16.3 0.1 1 23 684 707 684 707 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.33	32	6.3	0.4	6	20	12	26	6	28	0.86
2	13	0.084	8	8.1	0.4	2	20	34	52	33	54	0.93
3	13	0.79	76	5.1	0.5	1	12	213	224	213	233	0.83
4	13	4.8	4.6e+02	2.6	0.1	1	19	371	389	371	389	0.96
5	13	0.00024	0.023	16.1	0.4	1	23	396	418	396	418	0.98
6	13	0.00041	0.039	15.4	0.6	1	23	432	454	432	454	0.97
7	13	2.9e-05	0.0028	19.0	0.7	3	23	508	528	506	528	0.96
8	13	0.00088	0.085	14.4	2.3	1	23	544	566	544	566	0.98
9	13	1.6e-06	0.00016	23.0	4.5	1	23	572	594	572	594	0.98
10	13	0.0006	0.057	14.9	5.2	1	23	600	622	600	622	0.97
11	13	1e-05	0.00097	20.5	0.4	1	23	628	650	628	650	0.98
12	13	0.00049	0.047	15.2	1.1	1	23	654	676	654	676	0.98
13	13	0.00022	0.021	16.3	0.1	1	23	684	707	684	707	0.96

Sequence Information

Coding Sequence: ATGGGAGGCCAGCCGTTGAATTGCCCCGTTTGTTGCAATGCGACTTTTAGTTCTAAACAATCTCTAATTGAGCACTTAACTAATGTTTTAGAGAATGTCTATTGTCCTGTTTGTAGTTACAAATGTACCTCATTACCACACCTTGTAGAGCATTTGGCTCAGGATAATTGTCAGCCAACTAATAATGTTCATACCATTATATTTGAGCGCCGATCAGATGAGGAGAACATTGAAAACTCAACAGATAATGGAAATTCTGAACTTAAAGTATTTCAGAGTGAATTAAATACTAATTATGGGAGTCACTATACAGCCAACCAAACTTACGAAACTGAGGTGGCCCTAAATGATGCCAACAAAATGTATGTGGAATTGTTTAGCAAGCAGTTGAAACCATGCCTTCAAACACGAGAATTTAAACTGGTGAAGGAAAATGGGGAGAGCCGGTACATGATTGTCAGTCAGGATGATACCGACTTGAATGGTGGAAACACTATTGTAACTAAACAAAATGTTGATGGAACTATATCACTGACTACTGTTAAAGATATGCATCTGCAGTCAGAGAACATAATTACACCAGACAATGTACATGAAACTCAGGAGGATAACCAGGAAGATTGTCAAGAGGAGATCTACAGCTGCAACACTTGCAAAGTGTCATTCTCATCTGTTATAGAGCACATACAGAACTACCATAATGACCAGGATGTTGTTGTCGAGGAGCCAATGGAAGAGGGACAGACTGAGTCAGTGCCTGAATACGAGCCAACGGAGAATGAAGACACGTTGGTGACCACAGACAAGCAGACACCTCGGCGAGTCATCACTGACACGGGCGATATTGTAGAGGAGCCACTCATGTTTAAATCTGGGGATCAAATTATTTCGCCGGATCCATTGAACTTGGagCAAACGCCAGAAGCAAATAAAGCGGAGGGAAAAGGTCTGCGCGTCGTCACGAAACGTTTTCTGCAAGTAGACAAACTCTGCGACAGTGTCATCAAAGATACCATCCAGGCTGACGCAAAAAGTACAGaTAAAAGCGGTCCGTTTCACAAGGTAATCGTCAAAGAGGTGCCAAGGGATAACGGGTTTGCAATCAAAATGTACCAATGCTTAGCCTGTGACATATCTGTCTTCAATTTGGATGAATTCAAAATACATCCATGTAAAGTATtaaaatacccgtgtctttactgtcctgTGGCGTATGAAAACTCGAAATCTCTGTGTGCACACATGAAAGCACACAAAGTGAAAACAGagtcTGTCGTTCCTCTGCCAGTAAGATACGAATGTATTATATGCAGCACTGTTTTCCCAACCAACAAATCTTTGAAACTACACAGACGGATGCACGATCCAGTCAAATCACGTCCCATAGATCCTCCGGTAGAAAACACAGACGGTTCAGAAGTGAACGAAGACAGATACCTATGTAGTTTCTGCAACAAAATGATCCCTATTGACTACAGAACCATACATCAGAACTCACACAAAACCTCGCAGAAAATGAACTGCGGAATTTGTAATAAGAAGTTCACATCTAAAGAGTATCTTGAAATGCATACGAATgtacataatgtggataagGCACCAATGAACAAACAAGATAAGAATCTACCATACAGCTGTTTGTATTGCAACAGAAGATTTGCGAGGCCGCACGAAAAAGTGAAACATGAAAGGATACATACAGGTGAGAAGCCTCATTCGTGCGAAATCTGTGGCAAGTCGTTCCGTGTCTCGTACTGCCTCACCCTGCACATGCGCACGCACACCGGCGCGCGCCCGTACGCCTGCCCGCACTGCGGCAAGAGGTTCAAGGCACACAGCGTGTACAACCACCACCTGCTGACGCACTCGGAGGTACGCGCCTACAAGTGCCCATTCTGCCCGAAAGCGTTCAAGACGTCCGTGCAACTCGCCGGGCACAAGAACTCGCACACCAAGCCGTTTTCGTGCCAACATTGTAATAgGCCATTCGCATCCTTATACGCGGTTCGGGTGCACACAGAAACACATGCGCGTCAGAACAACTTGAAATTCTCGTGCGAACTATGCGGCGCGAGCTACGCGAGAGCTTTCGCTCTTAAGGACCACATCAAGCAAGCGCACAATGAACAGGAACAAGCGCAGTCGgTTCCTGGCGATGAAGACTGGTTGACAAAACACAACCCGGATACGGATGAAATTCCGGCACTCAATAAAGATTTGACACATGAGATAGACCTGGGATTGTCTACCAACGAACTAATAGTTCCTTAA
Protein Sequence: MGGQPLNCPVCCNATFSSKQSLIEHLTNVLENVYCPVCSYKCTSLPHLVEHLAQDNCQPTNNVHTIIFERRSDEENIENSTDNGNSELKVFQSELNTNYGSHYTANQTYETEVALNDANKMYVELFSKQLKPCLQTREFKLVKENGESRYMIVSQDDTDLNGGNTIVTKQNVDGTISLTTVKDMHLQSENIITPDNVHETQEDNQEDCQEEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPMEEGQTESVPEYEPTENEDTLVTTDKQTPRRVITDTGDIVEEPLMFKSGDQIISPDPLNLEQTPEANKAEGKGLRVVTKRFLQVDKLCDSVIKDTIQADAKSTDKSGPFHKVIVKEVPRDNGFAIKMYQCLACDISVFNLDEFKIHPCKVLKYPCLYCPVAYENSKSLCAHMKAHKVKTESVVPLPVRYECIICSTVFPTNKSLKLHRRMHDPVKSRPIDPPVENTDGSEVNEDRYLCSFCNKMIPIDYRTIHQNSHKTSQKMNCGICNKKFTSKEYLEMHTNVHNVDKAPMNKQDKNLPYSCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHIKQAHNEQEQAQSVPGDEDWLTKHNPDTDEIPALNKDLTHEIDLGLSTNELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01440338;
90% Identity: iTF_00123609;
80% Identity: -