Basic Information

Insect: Oligia strigilis
Gene Symbol: -
Assembly: GCA_951800025.1
Location: OX637570.1:4561083-4567057[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00028 0.027 15.9 0.3 1 23 8 30 8 30 0.98

2 17 3.6 3.4e+02 3.0 3.0 1 13 35 47 35 58 0.88

3 17 0.071 6.8 8.4 2.0 2 23 66 88 65 88 0.95

4 17 0.00013 0.012 17.0 2.4 2 23 96 118 95 118 0.95

5 17 0.00031 0.03 15.8 2.0 2 23 125 146 125 146 0.97

6 17 1e-05 0.001 20.4 2.6 1 23 152 174 152 174 0.99

7 17 3.9e-05 0.0037 18.6 3.3 1 23 180 203 180 203 0.98

8 17 0.001 0.097 14.2 1.5 1 23 360 383 360 383 0.97

9 17 0.072 6.9 8.4 0.0 2 23 410 432 409 432 0.96

10 17 0.035 3.3 9.3 3.1 2 23 455 476 454 476 0.97

11 17 0.00022 0.021 16.3 0.5 1 23 480 502 480 502 0.97

12 17 0.013 1.2 10.7 1.9 1 23 507 530 507 530 0.97

13 17 4.4 4.2e+02 2.7 1.5 2 23 536 558 535 558 0.76

14 17 0.00037 0.036 15.5 0.4 2 23 567 589 566 589 0.96

15 17 4.8e-05 0.0045 18.4 1.0 1 23 595 617 595 617 0.98

16 17 0.015 1.4 10.5 2.2 1 23 623 645 623 645 0.98

17 17 7.6e-05 0.0073 17.7 3.8 1 23 651 674 651 674 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00028	0.027	15.9	0.3	1	23	8	30	8	30	0.98
2	17	3.6	3.4e+02	3.0	3.0	1	13	35	47	35	58	0.88
3	17	0.071	6.8	8.4	2.0	2	23	66	88	65	88	0.95
4	17	0.00013	0.012	17.0	2.4	2	23	96	118	95	118	0.95
5	17	0.00031	0.03	15.8	2.0	2	23	125	146	125	146	0.97
6	17	1e-05	0.001	20.4	2.6	1	23	152	174	152	174	0.99
7	17	3.9e-05	0.0037	18.6	3.3	1	23	180	203	180	203	0.98
8	17	0.001	0.097	14.2	1.5	1	23	360	383	360	383	0.97
9	17	0.072	6.9	8.4	0.0	2	23	410	432	409	432	0.96
10	17	0.035	3.3	9.3	3.1	2	23	455	476	454	476	0.97
11	17	0.00022	0.021	16.3	0.5	1	23	480	502	480	502	0.97
12	17	0.013	1.2	10.7	1.9	1	23	507	530	507	530	0.97
13	17	4.4	4.2e+02	2.7	1.5	2	23	536	558	535	558	0.76
14	17	0.00037	0.036	15.5	0.4	2	23	567	589	566	589	0.96
15	17	4.8e-05	0.0045	18.4	1.0	1	23	595	617	595	617	0.98
16	17	0.015	1.4	10.5	2.2	1	23	623	645	623	645	0.98
17	17	7.6e-05	0.0073	17.7	3.8	1	23	651	674	651	674	0.98

Sequence Information

Coding Sequence: ATGAACGTACACTATAACAATTATAACTGTGAAATCTGCAACTCTCCTTTCGTTAATAAGAGAACCCTTAACGGCCATATGGCGAGACACAAACAAGGAGAGTTCTCTTGTTCGTTTTGCTCAAAAGTATTTGGCACAAATGGCAAGAAATTATGCCACGAAAAATTTGTACATATAGGAGATCAAAGAAGAAATAAGTGTCCACATTGCCTCGAAAAGTTCACGTCTTACGCTAAGAAAAATGAACATATGGTGAAAGAACATGGTGCAGACCCTCGAGTCCTCAAATGTATGGCCTGTGACAAAACGTTTACAAGAAGAGACAGACTGACCCGACACACTAAACGGGATCACTTACTCGAAAGGAAAAATGAATGCGAGCATTGTGATATGAAATTTTATGGAAAGAAAGAACTGAATTTGCACATGTTGAAACATACAGGTGAAAAACAATATAAGTGCGATGTCTGTTTCAAAGCTTTTGGACGGAAACATACCTTAAGAGAACATTTGAGAATACATGCAGATGACAGAAGATTTAAATGTGAACAGTGTGGACAAGCGTTTGTGCAGAAATGCAGCTGGAAAAACCACATGAAATCAAGACATGACGAGTTGctaacCTACGTTGTCCTACTGCTGGGCAGATCTCCTCCAGACTTTTCCAGTTTTCCTTATGATGTGCCTTCTCTGGCCAATCGGTCAGGAACGAATCTAAATCCTCACTCCACCGTGATAGTTGAAGTTGCGTCAGGAAAATCTGAAATAACGCTGATGAAGTCACGGGAGAAAGGTCGAAGTGAAGCGGCAGATCTTGCCAAGAAAATACTATCCGAGATGAAAGAACGCCAGGTTGCATCAAAAACAGAGACAGCACATACAAAATCAAAGGTAGTTGAAAAGAAAATTACTAACAAAGACATACTTCAATCGAAAactgatgaagaaaaaaaaggtagaaaaatgaagaaaaagaGTCAGAAGCAaaatgaggaagaattgtttaAACAACGTTATAATATTAGAGAGATTCTACTATGTAGCAATGCGACGCCGATTCGTAAATATGATATTGGATATGTGTGCTGTTTCTGTCAGAAGCAATACCCTAATGCCGAAGAACTAAAGACACATACCATTACAGAACACGATGACAGTGATAAACTAGACTTTATGAAAGGACAGCCCACATTGTACTTCTTAGTCAAGCTAGATATTACCGCACTGAAGTGTACCTTGTGCGACACAGGAATAGATTCAGTTGCAGACCTTATCCAACACCTGAGGAACGAACATGGAAAGCCAATGTTCACTGAAATCAAGAATTATATCATACCATTCAAGTTCGAAGACTCTACGCTTAAGTGCACCTTCTGCCCAAGAATATGCAACAGATTTAAGGTTCTGCAAGAGCACATGTACACACACTATAGAAACTTTGTTTGTGACGTATGCGGCACTGGTTTCGTTAACGAGAAAATGCTTAACACACATCATGATAGCCATAAAGTAGGAGTTTTCAAATGCGGTCACTGTCCCGAAGAATTTGACACTCCCAGAAAAAAGCAATACCATGAAAAGACTGTTCATTTGTTATCTTTGAACAAATGTGGGTATTGTGATGAAAAGTTTATGTGGTACCGTCAAAAATGTGCTCACATAGCCAAAGTACATGGCATTGTTGTAACTCAACCAAAGGAATGCAAAGCGTGCGATAAAGTCTTTCCGTCTGATTCCAAACTTCAGCTCCACGTCAGGAGAGATCACTTGCTGGAACGTAGATTCAAATGTACTGAATGTGATATGGATTTCTTTTCCAAAGAGTCGTTGAACGATCACATGGTCAAACATACTGGAATCAAAAGGTTTTCTTGCAAGGTTTGCTGCAAGTCATACGGGTTGAAGAAAGCTTTAAGAGAGCATATAAGGATACATGAGAACGATAGGAGATTTAAATGCGAAACATGTGATCAGGCTTTCGTGCAAAAGTGCAGCTGGAAAACGCATATGCGTTCTAAGCATGGAATTACAGTTTAA
Protein Sequence: MNVHYNNYNCEICNSPFVNKRTLNGHMARHKQGEFSCSFCSKVFGTNGKKLCHEKFVHIGDQRRNKCPHCLEKFTSYAKKNEHMVKEHGADPRVLKCMACDKTFTRRDRLTRHTKRDHLLERKNECEHCDMKFYGKKELNLHMLKHTGEKQYKCDVCFKAFGRKHTLREHLRIHADDRRFKCEQCGQAFVQKCSWKNHMKSRHDELLTYVVLLLGRSPPDFSSFPYDVPSLANRSGTNLNPHSTVIVEVASGKSEITLMKSREKGRSEAADLAKKILSEMKERQVASKTETAHTKSKVVEKKITNKDILQSKTDEEKKGRKMKKKSQKQNEEELFKQRYNIREILLCSNATPIRKYDIGYVCCFCQKQYPNAEELKTHTITEHDDSDKLDFMKGQPTLYFLVKLDITALKCTLCDTGIDSVADLIQHLRNEHGKPMFTEIKNYIIPFKFEDSTLKCTFCPRICNRFKVLQEHMYTHYRNFVCDVCGTGFVNEKMLNTHHDSHKVGVFKCGHCPEEFDTPRKKQYHEKTVHLLSLNKCGYCDEKFMWYRQKCAHIAKVHGIVVTQPKECKACDKVFPSDSKLQLHVRRDHLLERRFKCTECDMDFFSKESLNDHMVKHTGIKRFSCKVCCKSYGLKKALREHIRIHENDRRFKCETCDQAFVQKCSWKTHMRSKHGITV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -