Ostr024194.1
Basic Information
- Insect
- Oligia strigilis
- Gene Symbol
- Zfy1
- Assembly
- GCA_951800025.1
- Location
- OX637559.1:815108-820803[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.15 14 7.4 0.9 2 23 248 269 247 269 0.96 2 14 0.29 28 6.4 0.2 6 23 281 299 281 299 0.94 3 14 5.2 5e+02 2.5 0.1 3 23 311 332 310 332 0.91 4 14 1.5e-07 1.4e-05 26.2 0.8 2 23 355 376 355 376 0.97 5 14 1.7e-05 0.0016 19.8 2.6 1 23 382 405 382 405 0.96 6 14 0.0047 0.45 12.1 0.0 1 23 411 433 411 433 0.97 7 14 1.5e-06 0.00014 23.1 2.0 1 23 439 461 439 461 0.98 8 14 0.75 72 5.1 3.5 1 23 581 603 581 603 0.95 9 14 0.0004 0.039 15.4 2.0 2 23 610 632 609 632 0.92 10 14 4.2e-06 0.0004 21.7 1.5 1 23 638 660 638 660 0.98 11 14 1.3e-06 0.00012 23.3 4.4 1 23 666 688 666 688 0.98 12 14 0.00012 0.011 17.1 0.2 1 23 694 716 694 716 0.98 13 14 0.00028 0.027 15.9 2.2 1 23 722 744 722 744 0.93 14 14 0.0013 0.12 13.8 1.0 1 23 750 773 750 773 0.93
Sequence Information
- Coding Sequence
- atgaGTGATAAAAATGACCCCATACTTTTACTACCGAACCAGTCTCCGGCCATCGCGCAGATGGGCATCCTGGTACCGTTCTTCAACTCGCACACTAACCTTAGCAATGTCCGAGACTTCTCTAATGTGTGTCGGACGTGCGCTACCATCACGGAGTTCGTTATGCCCATATTCAGTGGAGAAGGGCTGCAGAACGACTTAGCTGATAAAATAAAGAGACACCTACCAATACAGGTACAGGAGAACGACGAGCTACCACTGGTGATGTGCTACCAGTGTTCGAGCACCCTGCTAGCATGGCATGAGCTGGTGAAGTGTTCCATACAGGCTGATGCAGCCCTGCGTGCAAAGATCTCCAGCCAAAGGGTATCTGTTGTTCCTAAgaaaaCAAATCCACCTAACACTACCGTTAAATCAAGTTCAAGTGTAGAAGAGGAAGCACAGAGCAAGTTGTTTTACACGAGTGTCAGAAATGCTCTCATTGACTTTCATATTGATCTGGATGACGATGATACGGACGTAGAGTTCGTTTGCCAAAAGTGTGTGGAGAAGCCAGCATTGACCACTGTGCACAGTCTCGCTGAACATATCCGACACGGCCACGCTCCTGACACACTCGACAATGCTGTTAAAACATTCATCACCAACTACATAACGTTTGAACAAGTGCTAGCGGAGGATTCTGACAGAGAAACACAATCAGACACTAAAGAGAAGTCCCAAATAGTTCTGCCGAGCCTGCACTGCCCGTTTTGCGCGAGTGTGTTCTCTTCGGCCACGCGGCTCGTGTACCATCTCAACAAACACGTGGAGGTGAGCATGGCGGCCGGCGCCAAGTGCTGCGACGTCGTCTACAGCGACAAGAAACACTTCGTGCAACACTTGCAAGACGCACACGTCGACAGGACAGCCGACGACACAGTGCCAGTGTGCGTCAGCTGTGGCTTCACTGCAAGCAATGGCGAAGAAATGAGACAGCATTATAAAGACGCGCACAACGATGTGAAAAGTGCGAAAGAGAAAAAAGTAGAGAGTCTAAACAACCAGAAGTACATACCAGCGGTGTGCCCCGAGTGTAACAAGATGTTCTCCAACAAGTACAACATGTTTGCGCACATGCGCAGTCACACGCACACTGCGCTCTACCCGTGCGACAAGTGCACCCGGACCTACCGCAACCAAGGGAACCTTACCCATCACAAGAGGCTTGCGCACCAGGGAATACTCAACTTCATATGCGTCGAGTGCGGGGAAGCGTTCCCCAGCAGGTCAGAGCGCGACATACACGCGCGCATACACTCGGGAGAGACGCCCTACAAGTGCCCGCACTGCGGCAAGTCGTACCGCGCCAAGAACACGCTCACACGACACCTCGAGATACACGCAGACATACGCAAATACGAGAGCCCCTGCGACTTGCCCGAGGATCCCCGCAGTGGCCCCTCTGACCCGTCCGAGCTATCCGATGACGAGCCGCTGGCCACGTACGCTACCAAAAAGCCCACGAAACTCTATACTAACTTCTACAGAGCACTCGTGAACTTTAGAGACCATCTTGTTAAGGATGAACATCATGAGGATTATCCTGACTTCACCGACTCGAGTGTGTCTGACGCTGAAGAAAATGACGTGGACAGGTTCGACGACCTGACGCAGTGCAACATGAGGCGAGACAGATTGGACGAGGAGACAAGGCTAGAGCTGAGAGAAGTGCAGAATAAAATCGACAACAAGACATACTACACGTGTAAGGTCTGTAGCAAGAATCTGAGCTCGGCGCACACGTACCTGTTCCACAAGCGCATCCACACGGGCGAGCGGCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCCAACGGACTGCAGCGGCACCTCACGGAGACGCACGAGCGCGTGCGCCGGTACAACTGCTCACTCTGTACCAAAAACTTTGCCAACTCACAGAATCTCAAGCAACACTTACGGATACACACCGGAGAGAAGCCTTTCGTGTGTTCTCACTGCGGGAAGAGGTTCACTCAGAGTGGTTCGTTACACGTGCATCTGAAGACACACAGTGAACACTTTCCTTATGAGTGCGCGGAGTGTGGGGCTAAGTTCAGACTGCGGTCGGGGCTGGTGCGGCACAGACTGAAGCACACGGGCGAGCGGCCGCACGTGTGTGCGACGTGCGGCAAGGGCTTCCGGCAGAGACACGAGCTCACGACGCACAGCCTCGCGCACAGCGGTGCCGCGCCGCACGCCTGCGCCGCCTGCCCGCGCGCCTTCCGCCAGCGTCGCGCGCTGTGGCACCACGTGCGGCGCGTGCACGACGCGGAACCTCCCGAAATTGCCTACAACGTTACGCACTACTAG
- Protein Sequence
- MSDKNDPILLLPNQSPAIAQMGILVPFFNSHTNLSNVRDFSNVCRTCATITEFVMPIFSGEGLQNDLADKIKRHLPIQVQENDELPLVMCYQCSSTLLAWHELVKCSIQADAALRAKISSQRVSVVPKKTNPPNTTVKSSSSVEEEAQSKLFYTSVRNALIDFHIDLDDDDTDVEFVCQKCVEKPALTTVHSLAEHIRHGHAPDTLDNAVKTFITNYITFEQVLAEDSDRETQSDTKEKSQIVLPSLHCPFCASVFSSATRLVYHLNKHVEVSMAAGAKCCDVVYSDKKHFVQHLQDAHVDRTADDTVPVCVSCGFTASNGEEMRQHYKDAHNDVKSAKEKKVESLNNQKYIPAVCPECNKMFSNKYNMFAHMRSHTHTALYPCDKCTRTYRNQGNLTHHKRLAHQGILNFICVECGEAFPSRSERDIHARIHSGETPYKCPHCGKSYRAKNTLTRHLEIHADIRKYESPCDLPEDPRSGPSDPSELSDDEPLATYATKKPTKLYTNFYRALVNFRDHLVKDEHHEDYPDFTDSSVSDAEENDVDRFDDLTQCNMRRDRLDEETRLELREVQNKIDNKTYYTCKVCSKNLSSAHTYLFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERVRRYNCSLCTKNFANSQNLKQHLRIHTGEKPFVCSHCGKRFTQSGSLHVHLKTHSEHFPYECAECGAKFRLRSGLVRHRLKHTGERPHVCATCGKGFRQRHELTTHSLAHSGAAPHACAACPRAFRQRRALWHHVRRVHDAEPPEIAYNVTHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01230874;
- 90% Identity
- iTF_00123588;
- 80% Identity
- -