Ostr026869.1
Basic Information
- Insect
- Oligia strigilis
- Gene Symbol
- -
- Assembly
- GCA_951800025.1
- Location
- OX637561.1:14626724-14627593[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-07 0.00045 20.9 0.0 1 34 12 45 12 52 0.94 2 2 2.5 1.7e+03 -0.1 0.1 17 25 106 114 104 114 0.88
Sequence Information
- Coding Sequence
- ATGGATGACCCCAACAAGAAGAACAGAAAATACTCGGAGACCGATCTCAAAACCGctgttgaaaatgttttgagTTCAACAATGACAGTTTACAGAGCTTCGAAGGAGTTTAAGATTCCATGGTCGACATTAAAAGAGAATGGGACGAAGTACAAAACTCTACGAGAGGGTGATCAAGATGCACAGATCGTAATGTCCAAGATAGGAAGGCCGTTTGCGTTACCTGTTGAAATAGAACAAAAGTTACTGGCCTATATTATTGAGATGCAAGAACGTGGTTTTGGTCTTACAGTTACCAAAATAAAGCAAATAGCATTATCTTTAGCAAAAGCTGCGAACATTTGCTGCACATTCAATGACAAAAAGGGATCTGCAGGTTGGAATTGGTGGGTGAAGTATAAAGAACGCTACGGGTTGTCTTTGCGAACACCGGAAAATCTTTCAGCAGGTAGAGCGATTTGTTCAAACCCGGTTATTTTAGaagatttttatgaaaaattagaaaaacagTTAAATGAACATGACATTCCACCCGAAAGAATATGGAACTGCGATGAAACTGGTCTGATGTTTGTCAACAAACCCAACAAAATTGTGACAAGCAttggaaaaaaatatgtttacaaCAGAACATACGCAGAAAAGGGTACGACAACCACATTATTGGCGTGCATAGATGCGACAGGATGTTACATCCCCCCATTTATTATATTCAAAGGTGTAAGAATCATACCACAACTGACAAAAGGATTTATGCCAAACACCCAAGTACGATTTTCTCGAAAGGGATGGATCACGGGTGAACTATTCCTAGATTGGTTAAAATTCTTTGTTCGATGTATCCCTCCAGCGCTCTATCACAacaaataa
- Protein Sequence
- MDDPNKKNRKYSETDLKTAVENVLSSTMTVYRASKEFKIPWSTLKENGTKYKTLREGDQDAQIVMSKIGRPFALPVEIEQKLLAYIIEMQERGFGLTVTKIKQIALSLAKAANICCTFNDKKGSAGWNWWVKYKERYGLSLRTPENLSAGRAICSNPVILEDFYEKLEKQLNEHDIPPERIWNCDETGLMFVNKPNKIVTSIGKKYVYNRTYAEKGTTTTLLACIDATGCYIPPFIIFKGVRIIPQLTKGFMPNTQVRFSRKGWITGELFLDWLKFFVRCIPPALYHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00172813;
- 90% Identity
- iTF_00172813;
- 80% Identity
- -