Basic Information

Insect: Oligia strigilis
Gene Symbol: clz9_3
Assembly: GCA_951800025.1
Location: OX637543.1:11004458-11007765[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.4e-10 9.5e-08 32.7 0.0 2 41 15 55 14 59 0.93

2 3 6.8 4.5e+03 -1.5 0.2 32 43 769 781 767 782 0.86

3 3 6.8 4.5e+03 -1.5 0.2 32 43 896 908 894 909 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.4e-10	9.5e-08	32.7	0.0	2	41	15	55	14	59	0.93
2	3	6.8	4.5e+03	-1.5	0.2	32	43	769	781	767	782	0.86
3	3	6.8	4.5e+03	-1.5	0.2	32	43	896	908	894	909	0.86

Sequence Information

Coding Sequence: ATGCGAAATTATATAAGAAAAAGTGATAGAGCACCGTACCCGCCAGAAAAATTACAAGAAGCAGTAAGAGCAGTTAAAAGTGGGGCCTTATCCGGATATGCGGCTtcaaaacattataatataccCAGATCAACGATAATAAATCGCgtATATGATCGTAAAGGCTTAAAGTCGAATTCTTTGGGAAGACCCGCCATCTTGTCACGCGAGTTAGAAGAAGATTTCGTAAAAAATATTCGTTTCATGGAAAAGTATGGGTTTGGTTTAACAAGAAAGGAGTTACTAGAAACGGTGGGTCAGTACGTTTCggcaaataatattaaaaatccaTTTAAAAATGGCATACCTGGTGAGGATTGGTTTcttctatttaaaaaaaggcATAATTTGTCTATCAAGAAGCCACAGCCGGTGGAGTATGCGCGAAAACAAGCATGCAGTCCATATGTTATATATCCATATTTTGATCTATTAGAAGAAACTATGAATGAGTTAGAGCTATACGACAAACCATCGCATATTTGGAACGTGGACGAAACTAGCTTTTCCAAGGATCCTTCTAAGTCCAAAGTAGTTGGTTGTGTAGGATTTTCCTCTACGCGAACTATAGCATCGCCTGGAAAGGACAACACCACAGTCTTGTTGGGGTGTAATGGCCTAGGAGAGAAAACTCCACCTATGATAGTTTTTAAAGGCAAAAATATTTGGGATGAATGGACGACCAATGAAGGCTATCCCGGTACAGCATACGCTGCGACAACTAATGGTTGGATGGAGACAGCAGTTTTCGAGGCCTTTTTTGAAAAAGTATTTCTAACTACAGTAGGACGAAAACGGCCTATACTTTTGATCTTCGATGGTCATGCAACTCATGTGGGTATAAACCTTATCGAAAAGGCCCGAAAAGCTCAAATCACAATTCTTAAAATCCCCCCTCATACAAGCCATTTGTTACAACCATTAGATTTGGCTGTAAATAAATCATTCAAGGATCGATGGGACGTAGCCATACTAAAATGGCAGAGGTTGAACATTGGTAAATCAttaccaaaaaaagaatttGCCAAAATGCTTGGTCAAATTTGGGGTGAGTTAGATCCGAGTATATGTGCAGCAGGTTTTCGAAAGGCGGGAATTTACCCTTTTAACAAACAAGCTGTTCCAGAAAACAAGTTCAACCAAGTGCATCTGCAAGAATGGAAACAAAAATTACTGTGTGATTCCGTCGAAAGACTAACAAACCAGCTAGATGTTGAGGTGCCGTTGTGTGTCAACCAGATCTGTGCAAATGCGAATTCCCAAGAACCTCTAGCTAGTACATCCAAGCGAAGTGACTTAGTCGTCAACCGTGTGATCAACCATCAAATAACTCAGGAACCTTGGGCTCTTACATCTCAGCAAAGTGACAACAATGAACAAATATCAAGCGGCTATTTCACTAACACGTCATACCGTACTGGCCACCTAACCAAAAGATTGAATCCGGATTCATTGCTCAAAATTTCATTGAAACAAATAAACTTAGGCATGGTCTCGGTGCCAATCCTCCATACGTTTCATACGCCCGCAAATGCAGATACCGTAGGTTCCcaactacataataatatagataaAGTCGAAATGCAAAAACCTAAGATTCAAATACTGGAAGACCGCCTTGTAACGTTTGAGGACTTGCTTTTGATGAAAATTAAACCAGGAACcagtacaaaaacaaaacggaAACGAATGGCTACTGGTGCAGAAGTTATAACGAGTGACGACGTCTACAAAAGAACTCTAGAGGCACAACAATCGCAAACCAAAAAACAGGAGAAAAAGAGTaagataaatacaaaaatacctttaactAAACAAGATAAACGGACAGTTAAAGaaagcgaaaaaagaaaagagaaaacTTATATGATTAAACAGAGCTCTAAAAAtggaaacaaaaaagaaaaaaatagaaaatattccaCATCAAGTGATAGCGAGACGGAAATAAAGTATGACGATGATAGTGACAGCAGTAATTTCTGGGAGGAAATATTAAAAGGTGATGACGACGATGAAGAGAGTGAAGAACTAGAGGTGAATATGGCCTCTGGTACAGAAGTTATAACGAGCGACGACGTCTACAAAATGACGCTGGAGGCACAACAATCTAAAACCAAAAAAGGGGAGAAAAAGAGTAAGATGAATACAAATACTTTTTTAACTAAACAGCGAGATAAACAGAAGGAGAAAGAAACTAATATAAAGAAAGAGAAAACATACATGATTAAAAAGAACTCTAAAAAtggaaacaaaaaagaaaaaactttagaaaaaaataggaaaaaaagaaaacattcctTATCATCAAGTGACAGTGAGATGGAAATAAAGTATGACGATGATAGTGACAGCAGTAATTTCTGGGAGGAAATATTAAAAGGTGATGACGACGATGAAGAGAGTGAAGAACTAGAGGTGAATATGGCCTCTGGTACAGAAGTTATAACGAGCGACGACGTCTACAAAATGACGCTGGAGGCACAACAATCTGAAACCAAAAAAGGGGAGAAAAAGAGTAAGATGAATACAAATACTTTTTTAACTAAACAGCGAGATAAACAGAAGGAGAAAGAAACTAATATAAAGAAAGAGAAAACATACATGATTAAAAAGAACTCTAAAAAtggaaacaaaaaagaaaaaactttagaaaaaaataggaaaaaaagaaaacattcctTATCATCAAGTGACAGTGAGATGGAAATAAAGTATGACGAGGAACTATTAAAAGGTAATGAAGATGGTGGGAGTGAAGATCTAGAGAATGAAAAAGAAAACCACAATACTAATGCACCATTTTGTGAGAATGATTGGCTCTTAGTAAAATTtgagcaaaaaaagtatgtaaaacatTATGTAGGTGTAGTGTTACATATAAATGCTAACGGTTCTCCTGTGGTAAAATACACAAGAAAGAAGTCGAAAGTAGAAGGCGATACCATTTTTTCTTTCCCTGTACTAGACGATATCTCTGACGTACTACACACGGAGGACATTGTCTCAAAACTGCCTACGCCTGCAATTGGTCGAAGAGGgcagattatttttaaaatgtcaTTTCATTCTTTTAATATTCAGTAA
Protein Sequence: MRNYIRKSDRAPYPPEKLQEAVRAVKSGALSGYAASKHYNIPRSTIINRVYDRKGLKSNSLGRPAILSRELEEDFVKNIRFMEKYGFGLTRKELLETVGQYVSANNIKNPFKNGIPGEDWFLLFKKRHNLSIKKPQPVEYARKQACSPYVIYPYFDLLEETMNELELYDKPSHIWNVDETSFSKDPSKSKVVGCVGFSSTRTIASPGKDNTTVLLGCNGLGEKTPPMIVFKGKNIWDEWTTNEGYPGTAYAATTNGWMETAVFEAFFEKVFLTTVGRKRPILLIFDGHATHVGINLIEKARKAQITILKIPPHTSHLLQPLDLAVNKSFKDRWDVAILKWQRLNIGKSLPKKEFAKMLGQIWGELDPSICAAGFRKAGIYPFNKQAVPENKFNQVHLQEWKQKLLCDSVERLTNQLDVEVPLCVNQICANANSQEPLASTSKRSDLVVNRVINHQITQEPWALTSQQSDNNEQISSGYFTNTSYRTGHLTKRLNPDSLLKISLKQINLGMVSVPILHTFHTPANADTVGSQLHNNIDKVEMQKPKIQILEDRLVTFEDLLLMKIKPGTSTKTKRKRMATGAEVITSDDVYKRTLEAQQSQTKKQEKKSKINTKIPLTKQDKRTVKESEKRKEKTYMIKQSSKNGNKKEKNRKYSTSSDSETEIKYDDDSDSSNFWEEILKGDDDDEESEELEVNMASGTEVITSDDVYKMTLEAQQSKTKKGEKKSKMNTNTFLTKQRDKQKEKETNIKKEKTYMIKKNSKNGNKKEKTLEKNRKKRKHSLSSSDSEMEIKYDDDSDSSNFWEEILKGDDDDEESEELEVNMASGTEVITSDDVYKMTLEAQQSETKKGEKKSKMNTNTFLTKQRDKQKEKETNIKKEKTYMIKKNSKNGNKKEKTLEKNRKKRKHSLSSSDSEMEIKYDEELLKGNEDGGSEDLENEKENHNTNAPFCENDWLLVKFEQKKYVKHYVGVVLHINANGSPVVKYTRKKSKVEGDTIFSFPVLDDISDVLHTEDIVSKLPTPAIGRRGQIIFKMSFHSFNIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00850584;
90% Identity: -
80% Identity: -