Ostr020746.1
Basic Information
- Insect
- Oligia strigilis
- Gene Symbol
- -
- Assembly
- GCA_951800025.1
- Location
- OX637555.1:19545678-19551817[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-12 2.5e-09 37.7 0.0 4 39 128 164 125 168 0.90 2 4 5.4e-11 3.6e-08 34.0 0.3 2 39 180 217 179 221 0.92 3 4 2.4e-14 1.6e-11 44.7 0.0 2 45 235 279 234 279 0.96 4 4 0.034 23 5.8 0.0 1 13 286 298 286 305 0.81
Sequence Information
- Coding Sequence
- ATGCCTTTTCAATCCTTCTACCTGCCTGTTCTCCAGGGCAGTGGCTTGGAAGAGCTGGCACCGCTGGCGCCAGCGGGCCCGGCTGCCACGCCAGTGTGTGTCAAGCAGGAGCGAGCCGAGTCACCACCAGCTACCACGCTAGAGACGCTCGAGTCAGCACCACATAATGCCAAGAGCTCGTCCCTGTTGGATCGCCACATGGACTTCACGAACGTCACCGAAGTGCCTGACTCCACTGACTTCATGCCGCTGCTGGTTGTCAAGGATGAACCTTCGTCCGAAGGTGAACAACCACATCTTAGTGGTGAAGACACGAGCGACTCCTGCGGCCGGCAGGCATCGCCCGCGCCGCGACACAGCCCCAAGAGTTGGACCCAGCATGACATGGAACGAGCTTTGGATGCCCTTAGAAACCACCAGATGAGCCTCACGAAGGCATCAGCAACCTACGGCATTCCCTCCACCACGCTCTGGCAGCGAGCCCACCGGCTGGGTATCGACACGCCAAAGAAAGAAGGAGCGGCCAAGTCCTGGAGCGAGGCTGATCTGCGAGGGGCTCTGCATGCCTTGAGGGCAGGCGCTATCTCTGCTAATAAGGCCAGCAAAGCTTATGGCATACCCAGCAGTACACTATACAAGATAGCTCGTCGGGAAGGTATCCGCCTGTCGGCGCCATTCAACGCGGCGCCCACCGCGTGGCGCCGCGCCGACCTGCAGCTGGCGCTGGCTTCCATACGCTGCGGCGCCAGCTCTGTACAACGTGCTGCCACGCAGTATGGGATACCTACAGGAACGCTATACGGACGGTGCAAGAGAGAGGGAATCGAGCTATCTCGCTCCAATCCCACGCCGTGGTCTGAAGACGCCATGGGCGAAGCACTCGAAGCTGTGAGGTGGTGCTATCGCGGCAATCTGGCCGATATCGCAGCTTATCGCTCGCTATCGGTACACGCCGATTACACAATATCAGGCATGAGGCATCACATTGTGCCAGCGACTACTGTTCGTTTATTGTCATACGATGTCGATAACTTGCTGATAATTGTGCTGGATTGTTTGGGGAATCCTTTGTATTTCGAATTTACTGCTCATACGTAA
- Protein Sequence
- MPFQSFYLPVLQGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKSSSLLDRHMDFTNVTEVPDSTDFMPLLVVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRWCYRGNLADIAAYRSLSVHADYTISGMRHHIVPATTVRLLSYDVDNLLIIVLDCLGNPLYFEFTAHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -