Olat000269.1
Basic Information
- Insect
- Oligia latruncula
- Gene Symbol
- Zfx
- Assembly
- GCA_948474745.1
- Location
- OX419712.1:5088013-5115449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.59 41 5.3 0.7 3 23 423 443 421 443 0.93 2 14 0.0001 0.0072 17.1 0.1 3 20 464 481 463 482 0.95 3 14 1.2e-05 0.00086 20.0 1.3 1 20 483 502 483 504 0.96 4 14 0.0035 0.24 12.3 0.4 1 23 510 533 510 533 0.97 5 14 0.14 9.6 7.2 0.1 3 12 545 554 544 558 0.88 6 14 0.0024 0.17 12.8 1.7 1 23 673 696 673 696 0.97 7 14 0.0016 0.11 13.3 0.0 1 23 703 725 703 725 0.95 8 14 0.15 11 7.1 0.9 2 23 730 751 729 751 0.96 9 14 0.031 2.2 9.3 5.1 1 23 770 793 770 793 0.90 10 14 0.95 66 4.6 1.0 3 22 803 822 802 826 0.90 11 14 0.002 0.14 13.0 1.7 1 23 838 861 838 861 0.96 12 14 1 73 4.5 5.6 1 23 867 890 867 890 0.94 13 14 3.4e-05 0.0024 18.6 0.3 3 23 901 921 900 921 0.99 14 14 0.0019 0.13 13.1 1.0 1 23 927 950 927 950 0.96
Sequence Information
- Coding Sequence
- ATGAGTCAATTAAGATGTTACACTTGCCTACAGCTGGACAGGAAATTGAGACCATTAAAAGCTCAAGTTAAATTCCTTTTTGCTTTACTGTGTCCAGAAATGTTTATTAAAACTACGGATAATGCTCAGTACCTAATATGCTGGGAATGTGAGTTCATGGCTGATAAGATTAAACGGTTTCAAACTAAATTAAAAAAGGCAAATGAAATTCTAAACCTGTCCTTCAAAGGCAAAGCAACCAGCATCGAAGGACTGTCATGCCTGAAAGTAACTTCAGTAGAAACAATTAGCCTTATACTACCACAAAGTACGCCAACTCTACCACAAAACGTACCAATGCTACCACAAAATCTACCAACCCTACCACAAAACCTACCAATGCTACCACAAAACGAACAAAAACTACCACTAAACGAACTAATGCTACCACTAAACGTACCAATGCTACCAAAAATTGTACCAAAAGTACCGCAAAATTTACTAGAACTATCGTTAAAAGATATGTTGGCTATACCAGTAAAGATGGACCCGCAAGCTGAGGTTAAGATAGAGATAGATGATGAAGAGACTGACAGTAATGACTTTGATGAACTGATCCAGCCTACTACCATTCTGAGTGTTCCCATGGAAGAGTCAGATCCACTACTGATACCAAGACTAAAACAGCCGGCCGAAATAGAGGTGCCTCCCCAAAAACTGGTAAAAGATGAAATCATAGAACCTGCAATCAACTACATACCTCAAAAAGTATGTATCAACACACCAAAAGACGAAGTAAAGCTTAGAGGGTTCAGAGAACCTGTCAAGGTTACTGTTGATGATCCTAACTTGGTGATGTGTGCAGAAGTCAACCCGGTTCTAATGAACAAAGATATAGCCCCAGTTAAAAGTAAAAAAAGCGATGAACTACTCACAAAACTTCTATCAACTCCTTCTAAACGCGAAGAACTTTTCTTTAAGAGTCAACGCGTTCCAAATTCACCAGAATGTCACAAAAGTTCTGGTATTGACAGACAACGCGACTCGAATCCTCCAAATGAATCAGAACTCAGCGAACAAAGCGCTGATGCTGCTTCTAGAGAAGATGAGGCCAAATTGATAATTTTGAACAGGACTGAAGTAAACGCACAGAGGGACAAAAAGAGGTCAAGACCTGTATATTTAGCAGCTTCTCATAAATGTGAGCGGTGTATAGAATGGTTTCAGAGTCAAGACAAATTGGACGAGCATAATTTCAAACATGATGCGTTACGAGGCAACTCAATTTGCGATATTTGTGAACAAAGATTTGCCGACGACAGTTTACGATATGAGCATCACCAGCAGCATTTTATGACATTTAGAGAGAGGAGTAGACATATATTTGAAACTCATAGCCAGAAGAGTGACTGTGAGGAATGCGGCAAAACGTTTTCAACTGCGCGTATGTTGAAGGTGCACGTGttCTTCAAATGCGACCATTGCGACAAATTCTTTGCAAATAAACGCTCTTTGAAGGATCATATTGAAGAAATTGGTGGAGTTAAATATACTTGCGATATCTGTAAGAAGGATAGTAAAAACAAAAGGATTCTGGCTCGCCACATTCAAGTCGTTCACGAGGGAAAGAAACCGAAGAAAAAGTTGAAGATATGTGAAGTTTGTGGGAAATCATTTACAAAATTGCTTCTACAGACTCTATCAAAATTAACAAAAACATACACAGACCATACAATATTCATCACACATACTGATGAAGAAGATGACAAGCAAAAAGTAATCATCAAACAAGAAAATGAACATTCCAATGATTCCTTTCATAATTATGATGAAAACAACGACTTTTCCCTCCAAGAAATTAAAAAAGAAAACGACACAGAGACTAAAGTAACAAAAAAAGAAAAATCGCTCCATTATAGGATAGTCTATGAAAAGAATGCCCAAAAAGTTTTGAGAAAAAAGTTCGCTATACAACCTGGAGATTCGCAAACATGGCTGGACAGAGAGAGGAATTGTGATTTCTATAAGGAGTTTAAATATAAATGCAAGTTGTGTGTAGATGGATTTAATACTAAGGAGAAATTGAAAAGGCATATCTTAAAATATCATGATGATTCTGCAGGCTCCTACATATGCCCGACATGCAACATACGCTTTATCAGCGAGCCCTCTCTAAGCGCACACATAGACGCGCATGAGTTTGCGTGGGAGTGTGCGCGCTGTGGCTTTCAGTGTTATTCTGTGAGGAGATTGAACGCGCATATAAACACGCACAGTGCTGTCCAGTGTGTGTATTGTGAAGCGAAGTTCCACCGTCACCTGGACACGCACACCTGTTCAGTCTGCTCTCGTCACTACAAGTCGCGCGCCGCACTGCGCAAACACTTCACTTTGAAGCACAGCTCCTGTGTGGCTGAGCAGGCTTACTGTGTGCTGTGTGACAAACAGTATGAGAGCGAGCATGTTTATAGAAGGCACGTGCATACCAGCGCCGCGCATCGACGGGAGAGGGAGAGTCAAGTCAAAAAGAAGTTCCCCTGCCCAGAATGCAGCAACACATATTCCAGGCGAGCATACATGATGAATCACTACCGACACGTGCATATGAACCAGTCGAAACACTACTGCTCGGACTGTGATAGACACTTTCTCAACAGAACGCGGTACGTAGACCACATGCGATTCAATCACGAAGGAGTCAAGAAGGAGAAGAATAAACTTTGTAATATTTGTGGAAGAGGCTTCGCTGCAAACCGCACTCTTCTTAACCACATGCGAACGCACTCGGGGGAGCGGCCGTACGAGTGTGAATACTGTTCGGCTAAGTTCACACAACGAACTTCCATGTTGTCACATGTCAAATATATACATATGAAGAGTAAGCGAAGAGGGCAGTGGCAGCAGTGA
- Protein Sequence
- MSQLRCYTCLQLDRKLRPLKAQVKFLFALLCPEMFIKTTDNAQYLICWECEFMADKIKRFQTKLKKANEILNLSFKGKATSIEGLSCLKVTSVETISLILPQSTPTLPQNVPMLPQNLPTLPQNLPMLPQNEQKLPLNELMLPLNVPMLPKIVPKVPQNLLELSLKDMLAIPVKMDPQAEVKIEIDDEETDSNDFDELIQPTTILSVPMEESDPLLIPRLKQPAEIEVPPQKLVKDEIIEPAINYIPQKVCINTPKDEVKLRGFREPVKVTVDDPNLVMCAEVNPVLMNKDIAPVKSKKSDELLTKLLSTPSKREELFFKSQRVPNSPECHKSSGIDRQRDSNPPNESELSEQSADAASREDEAKLIILNRTEVNAQRDKKRSRPVYLAASHKCERCIEWFQSQDKLDEHNFKHDALRGNSICDICEQRFADDSLRYEHHQQHFMTFRERSRHIFETHSQKSDCEECGKTFSTARMLKVHVFFKCDHCDKFFANKRSLKDHIEEIGGVKYTCDICKKDSKNKRILARHIQVVHEGKKPKKKLKICEVCGKSFTKLLLQTLSKLTKTYTDHTIFITHTDEEDDKQKVIIKQENEHSNDSFHNYDENNDFSLQEIKKENDTETKVTKKEKSLHYRIVYEKNAQKVLRKKFAIQPGDSQTWLDRERNCDFYKEFKYKCKLCVDGFNTKEKLKRHILKYHDDSAGSYICPTCNIRFISEPSLSAHIDAHEFAWECARCGFQCYSVRRLNAHINTHSAVQCVYCEAKFHRHLDTHTCSVCSRHYKSRAALRKHFTLKHSSCVAEQAYCVLCDKQYESEHVYRRHVHTSAAHRRERESQVKKKFPCPECSNTYSRRAYMMNHYRHVHMNQSKHYCSDCDRHFLNRTRYVDHMRFNHEGVKKEKNKLCNICGRGFAANRTLLNHMRTHSGERPYECEYCSAKFTQRTSMLSHVKYIHMKSKRRGQWQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -