Basic Information

Insect: Oligia latruncula
Gene Symbol: -
Assembly: GCA_948474745.1
Location: OX419698.1:18332478-18335556[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.9e-05 0.002 18.8 1.1 1 23 59 82 59 82 0.94

2 12 1.2e-05 0.00085 20.0 3.8 1 23 88 110 88 110 0.96

3 12 1.7e-05 0.0012 19.5 0.1 1 23 116 138 116 138 0.98

4 12 6.4e-06 0.00044 20.9 0.1 1 23 143 165 143 165 0.97

5 12 0.00049 0.034 15.0 4.2 5 23 174 192 171 192 0.96

6 12 1.1 73 4.5 1.1 1 23 252 273 252 273 0.90

7 12 0.033 2.3 9.2 1.4 2 23 607 629 607 629 0.96

8 12 5.8e-06 0.0004 21.0 3.2 1 23 635 657 635 657 0.97

9 12 2.1e-05 0.0015 19.3 1.1 1 23 663 685 663 685 0.98

10 12 0.0017 0.12 13.2 3.0 2 23 692 713 691 713 0.96

11 12 1.9e-05 0.0013 19.4 0.4 1 23 719 741 719 741 0.97

12 12 0.00014 0.0099 16.6 1.9 1 23 746 769 746 769 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.9e-05	0.002	18.8	1.1	1	23	59	82	59	82	0.94
2	12	1.2e-05	0.00085	20.0	3.8	1	23	88	110	88	110	0.96
3	12	1.7e-05	0.0012	19.5	0.1	1	23	116	138	116	138	0.98
4	12	6.4e-06	0.00044	20.9	0.1	1	23	143	165	143	165	0.97
5	12	0.00049	0.034	15.0	4.2	5	23	174	192	171	192	0.96
6	12	1.1	73	4.5	1.1	1	23	252	273	252	273	0.90
7	12	0.033	2.3	9.2	1.4	2	23	607	629	607	629	0.96
8	12	5.8e-06	0.0004	21.0	3.2	1	23	635	657	635	657	0.97
9	12	2.1e-05	0.0015	19.3	1.1	1	23	663	685	663	685	0.98
10	12	0.0017	0.12	13.2	3.0	2	23	692	713	691	713	0.96
11	12	1.9e-05	0.0013	19.4	0.4	1	23	719	741	719	741	0.97
12	12	0.00014	0.0099	16.6	1.9	1	23	746	769	746	769	0.96

Sequence Information

Coding Sequence: ATGCCAGAAGAAAGCGCCCAAGAAGACGACAAAACTAAAGTCGAAATTATCGAGAAAACGAAGTTTACAATAAGCGAGAACGGAAAGCGATACGCGAAGTGTGGCGTGTGTCACAAGAGTGTGTCCGTGGGGGGGTGGCCGCGCCACATGCGCGCGCACCGCGGCGAGAGACGCCACAGCTGCCACACGTGCGGACTCGCCTTCAACGACAGCGGCAACCTGGCGCGCCACTCGCGCGCCATACACTCCAAGCAGCGACCACACGCCTGCCTCACGTGCCCCAAAACATTCTCACGAAAATCTCACCTGGAAGACCACGTAAAGTCTCATTCAGAGAGTAGGGCATTCGTGTGTGATATATGCGGGAAGGGATCCAAATCAAGCGCAGCACTACGCATGCACGCGCGCACGCACGATGCATGCCGGTTCCCGTGCGTGCAGTGTGGCGCACGGTTCAAGCGGCGCGGTGAGCTGAACGCGCACATGTCTGTGCATACCGGGGAGAAGGCACATGTGTGCCACTGCGGGAAAACTTTCCGATTGCGAAGCCAGCTGACGGCACATACTAGAGTGCATCAAAAAACACGGGAGCAGGAAATGGAAGAGCTAACCAATGCTAGCAACACACTAGGGTTGAAGCCTGAGTTTTCTCGTCCGCAGCCGCAGCAATACCGCACATGCGTGTACTGCGCGACCACGCACCCCGTCGCCTCCTACCGGAAGCATCTCGTCGTGGAGCACTCCCACCGGCTGTTCCACTGCGAGGAGTGCGACGCCTTCGTCGACAGGAAGGACTTCGTCGTGCACATGTCGTTCCACGCTCTACACTTCACCGCAAAGGGCATTAACCGAAAGAAATTTAAAAAGAAGGAAGATATTGTCAGGCAGATTCCCAGCACAGTGCGTCCAGCCCGTGCTCCACAGTGTCCACCGAAAACCCAAAGTCCACAGTGCGCACCGAAAACCGACAATTCACACTGCTTACTGATAACCCAAAGTCCACAGTGCGCACCGAAAACCGAAAATTCACAGTGCGCACCGAAAACCGAAAATTCACAGTGCGCACCGAAAACAGAAAATTCACAGTGCGCACCGAAAACAGAAAATCCACAGTGCGCACCGAAAACAGAAAATCCACAGTGCGCACCGAAAACAGAAAATCCACAGTGCGCACCGAAAACAGAAAATCCACAGTGCGCACCGAAAACAGAAAATCCACAGTGCGCACCGAAAACAGAAAATCCACTGGCTTCACCGAAAACCCAAAGTCAACAGTGCGCACCGAAAACGGAAAATCCGCAAGCTTCACAGAAAACCGAAAGTTCACAGTACGCACCGAAAATCGAAAGTAAACCAATTATTAAAACAGATGATATAAATCTCCCTGTTGTGGTTAAAACCAAGACGTGTGTTCAAGAGAATGAGTTTTCAGACCACAGTGATATAGACGGCTTCGAACCTCTACCTGAGTCAGTGTTCGAAGCCATCGAGGACTCGCAAGACGGCCAGCATTTAGCAGATAATACCACTCACACGCCTGAGAATCGGCCACACAGAGACGAGTCCAAAATATCTTCACAACCCGAAAACAATAATTTAAGTACTCCTGCCCCGAGTTTGGAAAAAAATTATAAATTTAATAATTGTTCAGTAGTTATAAAGGCAATCAATATAAATAATTGTGCCCAAATGAATATCGCAATTAAAAATAGTAAAGTAAACAACAATCCAGCCAATAAGACTCCCCCAAAAACTACTGACGCTAGTACTAGTGGTAATCACCCGACTGACGAAAAGAAGAGGACCCAGAAGATACGAAAGTGTCCCTTCTGTCCTAAAGAATGCAGAGCAGCGTCCAGCTACTTCTACCACCTGAAATACGTCCACAAAAAAAGCAAGGTACATGAATGCGAAGTGTGCGGCAGAAAGTTCAACACCAGATCCTGCTTGACGCAACACATGGCCATACACGCTGCACAGTACGAGTTCGAGTGCCAGCAGTGTCCGAAACAGTTCAAGACTAAAGCGAGCCTTTACATCCACGAGCAGACGCACAGCGGTAAGAAGTTGTGGTCGTGCAGCCATTGCGAGACATCGTTCAGATGGAAGACGCAGCTGCAGAGGCACGTGAACAGGCACGCGGCGGAGAAGGGGCACGTCTGTGACGCGTGCGGGCGCGGGTTCAGCGTGCGGAGCGATCTGTTGCGGCATGCGCGCACGCACACCGCAGGGAACTTCACCTGTGATAAGTGTGGACAGAAATTCGCTCAGCTGCGGTATTTGAAAGTGCACACTACAAAGCAGCACTCGACCAATGTTAAGAAAGGATCTGAGTAA
Protein Sequence: MPEESAQEDDKTKVEIIEKTKFTISENGKRYAKCGVCHKSVSVGGWPRHMRAHRGERRHSCHTCGLAFNDSGNLARHSRAIHSKQRPHACLTCPKTFSRKSHLEDHVKSHSESRAFVCDICGKGSKSSAALRMHARTHDACRFPCVQCGARFKRRGELNAHMSVHTGEKAHVCHCGKTFRLRSQLTAHTRVHQKTREQEMEELTNASNTLGLKPEFSRPQPQQYRTCVYCATTHPVASYRKHLVVEHSHRLFHCEECDAFVDRKDFVVHMSFHALHFTAKGINRKKFKKKEDIVRQIPSTVRPARAPQCPPKTQSPQCAPKTDNSHCLLITQSPQCAPKTENSQCAPKTENSQCAPKTENSQCAPKTENPQCAPKTENPQCAPKTENPQCAPKTENPQCAPKTENPQCAPKTENPLASPKTQSQQCAPKTENPQASQKTESSQYAPKIESKPIIKTDDINLPVVVKTKTCVQENEFSDHSDIDGFEPLPESVFEAIEDSQDGQHLADNTTHTPENRPHRDESKISSQPENNNLSTPAPSLEKNYKFNNCSVVIKAININNCAQMNIAIKNSKVNNNPANKTPPKTTDASTSGNHPTDEKKRTQKIRKCPFCPKECRAASSYFYHLKYVHKKSKVHECEVCGRKFNTRSCLTQHMAIHAAQYEFECQQCPKQFKTKASLYIHEQTHSGKKLWSCSHCETSFRWKTQLQRHVNRHAAEKGHVCDACGRGFSVRSDLLRHARTHTAGNFTCDKCGQKFAQLRYLKVHTTKQHSTNVKKGSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00925051;
90% Identity: iTF_01093351;
80% Identity: -