Olat012235.1
Basic Information
- Insect
- Oligia latruncula
- Gene Symbol
- -
- Assembly
- GCA_948474745.1
- Location
- OX419713.1:4202901-4215656[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 1.5 1.1e+02 4.0 0.3 3 23 29 50 27 50 0.89 2 27 0.55 38 5.3 0.7 2 23 87 109 86 109 0.91 3 27 1.1 80 4.3 0.4 3 23 135 156 133 156 0.94 4 27 0.67 46 5.1 1.5 2 23 179 200 178 200 0.95 5 27 3.2e-05 0.0022 18.7 1.5 2 20 205 223 202 225 0.88 6 27 0.86 60 4.7 0.7 1 23 262 285 262 285 0.87 7 27 0.002 0.14 13.0 0.4 2 23 318 340 317 340 0.96 8 27 0.057 3.9 8.5 0.1 3 23 367 388 365 388 0.94 9 27 8.2 5.7e+02 1.7 3.0 2 20 411 429 410 432 0.91 10 27 1.1e-06 7.7e-05 23.3 3.7 1 23 436 459 436 459 0.96 11 27 2.3 1.6e+02 3.4 0.3 3 20 466 483 465 485 0.89 12 27 0.21 15 6.6 0.1 1 23 492 515 492 515 0.95 13 27 0.0017 0.12 13.2 2.0 1 23 522 545 522 545 0.97 14 27 3.6e-06 0.00025 21.7 1.1 1 23 550 572 550 572 0.98 15 27 4.8e-05 0.0034 18.1 2.6 1 23 578 600 578 600 0.92 16 27 0.22 15 6.6 0.1 2 23 653 675 652 675 0.94 17 27 0.35 25 5.9 0.8 2 23 699 721 698 721 0.95 18 27 7.5e-05 0.0052 17.5 0.5 2 23 745 766 744 766 0.97 19 27 0.13 8.8 7.3 0.5 1 21 770 790 770 791 0.91 20 27 0.77 53 4.9 0.1 1 23 832 855 832 855 0.94 21 27 0.69 48 5.0 0.0 2 23 881 903 880 903 0.95 22 27 0.0056 0.39 11.6 0.5 2 23 927 948 926 948 0.95 23 27 2.1e-05 0.0014 19.3 0.0 1 23 952 975 952 975 0.97 24 27 0.0066 0.46 11.4 0.6 1 23 979 1002 979 1002 0.98 25 27 3.2 2.2e+02 2.9 0.6 1 23 1007 1032 1007 1032 0.88 26 27 0.1 7.3 7.6 5.7 1 22 1041 1062 1041 1064 0.88 27 27 0.0063 0.44 11.5 0.2 1 23 1074 1097 1074 1097 0.96
Sequence Information
- Coding Sequence
- ATGTTCATCGCGCGACAGAACGCCAAAACGATGATAGAGTATACTACAGCTTACCCCTTCAAGCTGCCAGAATCTTCCATGGTTTGCGTGTACTGCTGTGATAGCTTCCCAGACCCCGCGAAGTTTAGGGAACACATGAATTTAGAACATCAGGACTTCAAAGTACGAATGGCTTTCGTCCACGTGGCCGAAGCTTCCGTAAAAGTCGATTGCACTGACCTTAAATCATATCCGTTTAGGCTCCCGGAGAGTTCCATCGTATGCGTTTACTGCTGCGAAAGCTTTGACGAGCCCTCTCGCTTCAGGAAGCATATGGATGACGACCACGAGGTAGTCAACGCCAGGGTCGCATTCTCACATCTCCACGAAGGATACATTAAGGCCGATTGCACAGACATGCACTGCAGAATATGCCTTGAAACTTTCACCAAAATCGAAGACGCTGCCATTCATTTAAACAAAGTCCATAAACAAAGTATCGACTTAAATCATGATATAGGCCTTCAGCCTTTTAATATACAGAATGACAAGTTATCCTGCGCCGTATGCCACGACAAGTCCTCCAACATTCGGAGTTTGAGCCGACACATCCAGAAACACTTTTTCCAATGCACCTGCGAACTTTGCGGCAAATCTTTTGCGTCTTCTACCTCCTTGCAAAAACATCTCGAGTTCTCCTGCCCTTTTGTACCGAAACAGAGGAGATGTAGGAAGTGCAAAGTTGTTTTATACTCGACTGAGGATCAGAAGAGGCACTTTGAGATATCCAGACAGTGTCGACAGCACATATGCTCGGTTTGTGGCGACAGATTTAGCACGTGGAAGATAAAACGCAGTCATATGGAGCAAGCACACGACGTGATGCGACCGTTGTCCATCGCGCGACGGAATGCAGAGACTATCGTCCTGAACGCCACGGTATACCCCTTCCGACTGCCGGACACAGCCCTCATGTGCGTATATTGCGGTGACAGTTACACCGACGCCACGCTGTTTCGACAGCACATGAAGAAAGAACACTTCTCCTTCAAAGTCCGAACCGCTTTCGCTCATATTGCCTACGAGTGCTACCTCAAAATCGACTGCACAGAAATGGCCTGCAGAATCTGCTTTGAATCCTTTGCAAGAATCGACGATATTGCACGACATTTAAACGAGAGACATGACGCCAAAATCAATTTTGACTTCCAATTAGGACTACATCCCTACAGATTTTTACAAGACAGACTCATGTGCGGGATATGTGATCTGAACTTCCCCTGTATGCGGCAGCTAAGTCGTCATATGTCGTGTCACTTCCTGAACTTCACGTGCGACACCTGCGGCAAGTCTTATACGACGAACAGCTCCTTACAGCACCACATCCGATTCACGCATATTACAGCCGCGAGAATATGCAGAAAATGCAAAGAGCAGTTCAGTTCTTTAGAAGCTAAGAGAGAGCACACAATCAATTCTCCTGGCTGTTGGATGTATCAGTGTCTTGTTTGCCTAGAGCGATTCATGACATGGCCTGCCAAAGAACGACATTTGGTAATGGCTCATGGGCAATCCAAAAAGTCCTATTCCTGTTCCGAATGCAGTCAAAGCTTCACAACTAGAAATGCCTATAGAGGGCATTTCAATACGACCCACGCTGAAGTCAACTTCCCTTGCGCGCACTGCGGACGGAAATTCGCCTCTAAAAGATATTTAGAACAGCATATGCTAGTCCACACAGGCGTAAAAACGTTTCATTGTAATGTGTGCTCTAAATCTTTTCCGAGAAAGAAGAATCTTGTTCAGCACATGTGGACCCATAGTGACTGGCCCACAAAGGATATTGACGGACTTGAAAGTAAACCGAAACAAAGATTGTTTGAAAGGTCCGTTGGACAGAACCCGCAAAGGCAAAACGCTGTTCTTGTCCTAAAACATTCGACAGCGTTTCCTTTTAAGACTCGTTTTAATAGGATCGTCTGTTCGTACTGCCATGACGAGTTTGAGCCAATGGCCGCGTTGAGAGAACACATGAAAGCCGACCATTCCAGTGCTGACTACAACAGCGCTTTCTATAAAGTCTACGATGCCCTTAAAGTTGAAATTACTGATCTTAAATGCACCATGTGTTCCCACGAACTTCCGAATATAGACAGTTTCATGAACCACATTTCTCGAGACCACAAAATCAAAGTTAACTTTGACGTGCCTTTTGGAGTACTACCTTATAGACAAGCACCTTCGGGGAGATGGACGTGTCTCGAATGTGACAAAACATTTCCTAAATTCTCACAAATCAACGTCCATTTGAGGACACATATGAAGATTTTTACTTGCGATAAGTGTGGAGCCACATTTTTGTCAGATCATGGTCTGAGGCAACATGAGCGTAACTTTAAATGCTACAAGTCTTCCTACAACCCTCGTTTTGGAAAAGCCTTGAAATATAAAAGCAATACTGAGATTATTCTAGAATGTTCAACCGCCTGTCCCTTTAGGACTTGGGGCCAGAATTTCAACTGCGTCTTCTGTCGGGTTCAATCAAACGATCCGATCGGTCTGAGAGCTCATATGGCGTCTCGTCACGCGAATTTCGATATACAGCTAGTGTTCAGTAGGAAAATAAGGAAGGAATTTTTGAAGATTGACATAACTGATCTGCAATGCAAACTTTGTTTTATACCGATTGATACTTTAGATGAGTTGGTGATACATTTGAAAAATGATCATAAACAGCCTCTGAACGCTGATGTTCAACCAGGGGTTCTTCCTTTTAAACTTAACGATGGTTCGAACTGGAAATGTGCTATATGCAAGATACAGTTCTCAGACTTCATATCGTTAAAGAAACATACATCCGAACACTATCAGAATTACGTCTGCGACACATGTGGAGAGGGTTTCATAACAGAATCTGCATTGAAAGCCCATACGAAGATACCCCACGACAACAAATACACTTGTAGTCGTTGCGTTGCTACATTCACTACTTTAGAAGAACGCAACATTCACATCAAAACCCAGCATACAACACTCCCTTACATGTGCGTTTACTGCAAAGAAAAGCCCAGGTTTGCGACCTGGGAGCTCAGAAAGAGACACCTCATGGAGTTCCATAATTATAAACCTGGGGCTGAAATGTATGAGTGTACGACTTGCCATATGACTTTCAAGACCCGTTCACAGAAGTATCACCATAATGTCAAAGCTCATAGGACGAAGAAAGAGACAGAATATAGTTATCCATGCGGTAGTTGTTCTAGAGCGTTCGCTTCTAAGTTGTCTTTGGATAAGCATATCGCGAAGAAGCATTTCCATGTATGA
- Protein Sequence
- MFIARQNAKTMIEYTTAYPFKLPESSMVCVYCCDSFPDPAKFREHMNLEHQDFKVRMAFVHVAEASVKVDCTDLKSYPFRLPESSIVCVYCCESFDEPSRFRKHMDDDHEVVNARVAFSHLHEGYIKADCTDMHCRICLETFTKIEDAAIHLNKVHKQSIDLNHDIGLQPFNIQNDKLSCAVCHDKSSNIRSLSRHIQKHFFQCTCELCGKSFASSTSLQKHLEFSCPFVPKQRRCRKCKVVLYSTEDQKRHFEISRQCRQHICSVCGDRFSTWKIKRSHMEQAHDVMRPLSIARRNAETIVLNATVYPFRLPDTALMCVYCGDSYTDATLFRQHMKKEHFSFKVRTAFAHIAYECYLKIDCTEMACRICFESFARIDDIARHLNERHDAKINFDFQLGLHPYRFLQDRLMCGICDLNFPCMRQLSRHMSCHFLNFTCDTCGKSYTTNSSLQHHIRFTHITAARICRKCKEQFSSLEAKREHTINSPGCWMYQCLVCLERFMTWPAKERHLVMAHGQSKKSYSCSECSQSFTTRNAYRGHFNTTHAEVNFPCAHCGRKFASKRYLEQHMLVHTGVKTFHCNVCSKSFPRKKNLVQHMWTHSDWPTKDIDGLESKPKQRLFERSVGQNPQRQNAVLVLKHSTAFPFKTRFNRIVCSYCHDEFEPMAALREHMKADHSSADYNSAFYKVYDALKVEITDLKCTMCSHELPNIDSFMNHISRDHKIKVNFDVPFGVLPYRQAPSGRWTCLECDKTFPKFSQINVHLRTHMKIFTCDKCGATFLSDHGLRQHERNFKCYKSSYNPRFGKALKYKSNTEIILECSTACPFRTWGQNFNCVFCRVQSNDPIGLRAHMASRHANFDIQLVFSRKIRKEFLKIDITDLQCKLCFIPIDTLDELVIHLKNDHKQPLNADVQPGVLPFKLNDGSNWKCAICKIQFSDFISLKKHTSEHYQNYVCDTCGEGFITESALKAHTKIPHDNKYTCSRCVATFTTLEERNIHIKTQHTTLPYMCVYCKEKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKETEYSYPCGSCSRAFASKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -