Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.03 2.7 9.5 0.1 3 20 159 176 157 178 0.92

2 6 0.0051 0.46 12.0 0.3 1 23 188 210 188 210 0.98

3 6 0.00049 0.044 15.2 0.6 1 23 216 238 216 238 0.97

4 6 0.00013 0.012 17.0 0.7 3 23 246 266 244 266 0.97

5 6 6.6e-06 0.0006 21.0 1.1 1 23 271 294 271 294 0.97

6 6 1.9e-05 0.0017 19.6 5.5 1 23 300 323 300 323 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.03	2.7	9.5	0.1	3	20	159	176	157	178	0.92
2	6	0.0051	0.46	12.0	0.3	1	23	188	210	188	210	0.98
3	6	0.00049	0.044	15.2	0.6	1	23	216	238	216	238	0.97
4	6	0.00013	0.012	17.0	0.7	3	23	246	266	244	266	0.97
5	6	6.6e-06	0.0006	21.0	1.1	1	23	271	294	271	294	0.97
6	6	1.9e-05	0.0017	19.6	5.5	1	23	300	323	300	323	0.96

Coding Sequence: atggcctCTACTATATTGGTCCAAAAACTTGTGTCAGTAAAGTTAAGCAAGGGCGAATTCGATAAAATACGATGGCTTAGAGCAAACAACACAGAGAAAATGTTTAAAGAAATCTCATCTCTGAAAAAGGTACTAGAAAATCAAGAACATAAAAAAACTTGCAGACTGTGCCTTAAGCCTGGCTATAGGAAGATATTTGATAATCATGACTTTGGAATTATCATTGGGATCAAACAAATATTGCACATACAGGTGACTGAAAATGATGGTAAACCACAGCACATATGCAGATCATGTGAGGTGGTGTTGAGAAATGCCGAGTTACTGAGGCAAACTGCTGAGGTCACACAGTGGAGGTTGCAACAGGAACTTGAAATGGTGACATGTATGGCACCAGACTGTGAAACAAAAGAAACCAGTCACCATGGTGGTTACTTTGTGAAGCGGGGCACGACAGTCGCGAGGGAATGGGCTTGTGGCAAATGTCGACAGATATTTTATAGCCAGGAGGAGTTCACGGCACATGAGAATTTGCTAACGTGTCGCAGCAGTAACAAGTTCTTTGTATGTGAGACTTGTGGACTAGAACTGAAGTCTATTACCAGGTTGAAAAGACACAGGCTGATTCACACCGGAGAGCTCCACTATCCATGCACTCACTGCCCTTACCGTGCGCGGACAAAGTACGCATTGCTGGTCCATGAGCGTGCACACAGTGGCGTGCGGCCGCTGGCCTGTCCACACTGCCCGGCCACCTTCCTCAACTCTTCGAACCTGGCGTCACACAAGCGCAGGCATTTGCCCCCAGCTTACCACTGTCCGATGTGTGATAGGGGCTTTAGATTCAAAGAGGCACTTCAGAACCATTTAGCAACACAACACAGCACTGCCAAGCCCCATATTTGTAATTCTTGTGGAAAATCATTTTCAACTAGAAAGATGTTATGCCGACATGAGCGAAGAGTTCACAATCGACCCAGACTGCGATCTGGAATAGTGCCCACATACTTACAACAGCAACAGGAAGACTTGACATAG
Protein Sequence: MASTILVQKLVSVKLSKGEFDKIRWLRANNTEKMFKEISSLKKVLENQEHKKTCRLCLKPGYRKIFDNHDFGIIIGIKQILHIQVTENDGKPQHICRSCEVVLRNAELLRQTAEVTQWRLQQELEMVTCMAPDCETKETSHHGGYFVKRGTTVAREWACGKCRQIFYSQEEFTAHENLLTCRSSNKFFVCETCGLELKSITRLKRHRLIHTGELHYPCTHCPYRARTKYALLVHERAHSGVRPLACPHCPATFLNSSNLASHKRRHLPPAYHCPMCDRGFRFKEALQNHLATQHSTAKPHICNSCGKSFSTRKMLCRHERRVHNRPRLRSGIVPTYLQQQQEDLT

Sequence clustering based on sequence similarity using MMseqs2