Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.5 1.6e+03 -0.1 0.0 23 31 33 41 26 42 0.71

2 9 1.9 1.2e+03 0.2 0.0 18 31 57 71 54 72 0.69

3 9 1.9 1.2e+03 0.2 0.0 18 31 87 101 84 102 0.69

4 9 1.9 1.2e+03 0.2 0.0 18 31 117 131 114 132 0.69

5 9 1.9 1.2e+03 0.2 0.0 18 31 147 161 144 162 0.69

6 9 0.18 1.1e+02 3.5 0.0 18 32 177 192 174 192 0.73

7 9 1.9 1.2e+03 0.2 0.0 18 31 207 221 204 222 0.69

8 9 1.9 1.2e+03 0.2 0.0 18 31 237 251 234 252 0.69

9 9 0.18 1.1e+02 3.5 0.0 18 32 267 282 264 282 0.73

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.5	1.6e+03	-0.1	23	31	33	41	26	42	0.71
2	9	1.9	1.2e+03	0.2	18	31	57	71	54	72	0.69
3	9	1.9	1.2e+03	0.2	18	31	87	101	84	102	0.69
4	9	1.9	1.2e+03	0.2	18	31	117	131	114	132	0.69
5	9	1.9	1.2e+03	0.2	18	31	147	161	144	162	0.69
6	9	0.18	1.1e+02	3.5	18	32	177	192	174	192	0.73
7	9	1.9	1.2e+03	0.2	18	31	207	221	204	222	0.69
8	9	1.9	1.2e+03	0.2	18	31	237	251	234	252	0.69
9	9	0.18	1.1e+02	3.5	18	32	267	282	264	282	0.73

Coding Sequence: ATGGGCAATTTTATTTCCGCTACAAAGTGCGGGGCTATAAATCTGCGGGGTCATTTCCCGCGCAATGCAAGGTTGCTGTCGCTAGAACGTGCTCGTGGCACAGAGTACGGAATACCGTGGACGAGCGACTATGACACCACTTTTCATTTGTTTCGTCCGCAGTTGCTGTCGCTAGAACGTGCTCGTGGCACAGAGTACGGAATACCGTGGACGAGCGACTATGACACCACTTTTCATTTGTTTCGTCCGCAGTTGCTGTCGCTAGAACGTGCTCGTGGCACAGAGTACGGAATACCGTGGACGAGCGACTATGACACCACTTTTCATTTGTTTCGTCCGCAGTTGCTGTCGCTAGAACGTGCTCGTGGCACAGAGTACGGAATACCGTGGACGAGCAACTATGACACCACTTTTCATTTGTTTCGTCCGCAGTTGCTGTCGCTAGAACGTGCTCGTGGCACAGAGTACGGAATACCGTGGACGAGCGACTATGATACCACTTTTCATTTGTTTCGTCCGCAGTTGCTGTCGCTAGAACGTGCTCGTGGCACAGAGTACGGAATACCGCGGACGAGCGACTATGACACCACTTTTCATTTGTTTCGTCCGCAGTTGCTGTCGCTAGAACGTGCTCGTGGCACAGAGTACGGAATACCGTGGACGAGCGACTATGACACCACTTTTCATTTGTTTCGTCCGCAGTTGCTGTCGCTAGAACGTGCTCGTGGCACAGAGTACGGAATACCGTGGACGAGCGACTATGACACCACTTTTCATTTGTTTCGTCCGCAGTTGCTGTCGCTAGAACGTGCTCGTGGCACAGAGTACGGAATACCGCGGACGAGCGACTATGACACCACTTTTCCCTTTCAACTTGAGCTGTTGAAGatattattcttaaaataa
Protein Sequence: MGNFISATKCGAINLRGHFPRNARLLSLERARGTEYGIPWTSDYDTTFHLFRPQLLSLERARGTEYGIPWTSDYDTTFHLFRPQLLSLERARGTEYGIPWTSDYDTTFHLFRPQLLSLERARGTEYGIPWTSNYDTTFHLFRPQLLSLERARGTEYGIPWTSDYDTTFHLFRPQLLSLERARGTEYGIPRTSDYDTTFHLFRPQLLSLERARGTEYGIPWTSDYDTTFHLFRPQLLSLERARGTEYGIPWTSDYDTTFHLFRPQLLSLERARGTEYGIPRTSDYDTTFPFQLELLKILFLK

Sequence clustering based on sequence similarity using MMseqs2