Ofas016739.1
Basic Information
- Insect
- Oligia fasciuncula
- Gene Symbol
- -
- Assembly
- GCA_963082905.1
- Location
- OY720400.1:4872633-4874938[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5 5.4e+03 -1.9 0.0 29 43 12 27 12 28 0.74 2 2 6.3e-14 4.1e-11 43.4 0.3 2 38 55 91 54 95 0.93
Sequence Information
- Coding Sequence
- ATGATGCTGAGATCCGAGGCGAAGCGGCTTAAATCCAAGAACTCATTAGAAAGATTGTTCTACCAAGAACGCCAGAGTGTGAAAGATATGCGTAGGGGTTTCTTAAAGTTTCGGTGTCGAACACCAGgaCAGTGGTCTGGTCCGTCGTTACGAGGCTCGTCCGAAGAAAGCGTAGCAGCGGCGGTCAACGCTGTCATCAGTGGTCAGATGTCAGCGTATAAAGCTTCTGAACGCTATGGCGTTCCAAGATCAACAGTCAGAAGTCGTGTGGAACTTGCAAAACTTCGCAAGAGTTTAGGAAAACTATCAGAAAACTGA
- Protein Sequence
- MMLRSEAKRLKSKNSLERLFYQERQSVKDMRRGFLKFRCRTPGQWSGPSLRGSSEESVAAAVNAVISGQMSAYKASERYGVPRSTVRSRVELAKLRKSLGKLSEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -