Oiva039361.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000026.1:14866044-14892101[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.14 14 7.8 2.9 1 23 329 354 329 354 0.96 2 16 0.0083 0.84 11.7 0.1 1 23 358 381 358 381 0.93 3 16 1.4 1.4e+02 4.7 0.0 3 21 394 412 393 417 0.91 4 16 3.6 3.7e+02 3.3 0.4 3 10 449 456 448 456 0.96 5 16 3.6 3.7e+02 3.3 0.4 3 10 495 502 494 502 0.96 6 16 3.6 3.7e+02 3.3 0.4 3 10 543 550 542 550 0.96 7 16 3.6 3.7e+02 3.3 0.4 3 10 591 598 590 598 0.96 8 16 3.6 3.7e+02 3.3 0.4 3 10 639 646 638 646 0.96 9 16 3.6 3.7e+02 3.3 0.4 3 10 687 694 686 694 0.96 10 16 3.6 3.7e+02 3.3 0.4 3 10 735 742 734 742 0.96 11 16 3.6 3.7e+02 3.3 0.4 3 10 783 790 782 790 0.96 12 16 3.6 3.7e+02 3.3 0.4 3 10 831 838 830 838 0.96 13 16 0.00041 0.041 15.8 0.2 3 23 879 899 878 899 0.99 14 16 0.23 24 7.1 2.4 1 13 906 918 906 928 0.84 15 16 9.2e-05 0.0093 17.8 0.5 1 23 935 957 935 957 0.98 16 16 0.00066 0.066 15.1 1.5 1 23 965 988 965 988 0.91
Sequence Information
- Coding Sequence
- ATGGAGGAAGAATATAGCTCTGATATAAAAGGAAATAATGACATGACGAGagtaaaatatgataaaacaGGTGCAACAGATTTTGATGTAGTGCATGAAGAAGACAGTACGATATATTCAGAGGAAGAATATAGCTCTGGTGAAATAGAAAATACTGATATGAAGCGAGTAAATTATGATGACTATGAAAAAGATTCAACATATTCTGACGTAGAGTATCTAAGCGAAACAGATGATTCTCAGAGCGATGTTCACGCCATTAACAACATAAAACAAGATAAGTTAAACtacgataatataaaaaatgccATAGTTAACGATGATGTTCAAGTGAATAATACTAATAACGATGATGTTCCAAATAACTGTGATCCCGGGCTAACTGAGAATAACGTTCAAGTTATAAATGAagaccaattggatgaggttgatgatgatattattatgaatccTAATATATCCAATGATTTTTTGAATGATGAGGATGTTGTGTTAATGATTATTGGTAGTGCTGATGAAGTTAAATCTCTGGAAGATGACAATAAAAATGATATTGATGACAGTGTTGAAAATGGCTTTGGTGAtaacactaataataataataatgtactttTAAAGAATAAATATGAGAACCCCTTAAATAGATTGAAAGAtgaaaatcggtcaaaaaatagAGTTATTCTGAGGAATGTCATATTTTTACAAGAGAGCTTGCCAGTTGAACAAGATTTTGTACCTAGTATtgatgaagcaagtgatagtctACGGGTTTTAAGGGTGTATAGTAACAAGAGATGCAAAAATATGAACAACACACAAAACAGTAAACCAATTGAACAAAATAAAGAGTTTGTACCTACAATTGATAAAACAAATCGCCAACAGTGTTTAAGGAAACACGGAAAATGGGAGTGCGCCATATGTGGCATACACCACAAAACGCGCCCACGCCTCGGAAATCACGTAAAGTCGCACGCTGAAAGGTACAGGTGCAAAATGTGCAACTTTGTCACCGGCTTTAGCAAAAAGTCTTCATACTTCTCTCATGTGCGGCTAAAGCACCCTTCAGACTTCGCATGCCCGCTGTGCGGATTCAGTTTCGTCAGCGAACACGGCGTGAAGTTGCACCTCGTCATGGTCCATCGCTCCGAAGACGTGCAAAACTTGTCTGGCCCGTCGTGCGCGCAGTGCAACGTCCGCTTCGCGTCCGAGGCTGCGTATGACACGCACATGGCCGTGTCGCCCAAACACGTTAGCTCTGGCGCGCCCATGCGCAACGATTCAAACTACAAGCGCAACCGTCCAAAGGGCCGCGCGCCGCACAGGCCGGGCCCCAGCCTGCTGTGCGAGGTCTGCGGCAAGAGCTTCCTGGTGAGGGTCTATACACTATACCTGTTATTGTGCGGCGCGCCCATGCGCAACGATTCACACTACAACCGTCCAAAGGGCCGCGCGCCGCACAGGCCGGGCCCCAGCCTGCTGTGCGAGGTCTGCGGCAAGAGCTTCCTGGTGAGGGTCTATACACTATACCTGTTATTGTGCGGCGCGCCCATGCGCAACGATTCAAACTACAAGCGCAACCGTCCAAAGGGCCGCGCGCCGCACAGGCCGGACCCCAGCCTGCTGTGTGAGGTCTGCGGCAAGAGCTTCCTGGTGAGGGTCTATACACTATACCTGTTATTGTGCGGCGCGCCCATGCGCAACGATTCAAACTACAAGCGCAACCGTCCAAAGGGCCGCGCGCCGCACAGGCCGGGCCCCAGCCTGCTGTGCGAGGTCTGCGGCAAGAGCTTCCTGGTGAGGGTCTATACACTATACCTGTTATTGTGCGGCGCGCCCATGCGCAACGATTCAAACTACAAGCGCAACCGTCCAAAGGGCCGCGCGCCGCACAGGCCGGGCCCCAGCCTGCTGTGCGAGGTCTGCGGCAAGAGCTTCCTGGTGAGGGTCTATACACTATACCTGTTATTGTGCGGCGCGCCCATGCGCAACGATTCACACTACAAGCGCAACCGTCCAAAGGGCCGCGCGCCGCACAGGCCGGGCCCCAGCCTGCTGTGCGAGGTCTGCGGCAAGAGCTTCCTGGTGAGGGTCTATACACTATACCTGTTATTGTGCGGCGCGCCCATGCGCAACGATTCACACTACAAGCGCAACCGTCCAAAGGGCCGCGCGCCGCACAGGCCGGGCCCCAGCCTGCTGTGCGAGGTCTGCGGCAAGAGCTTCCTGGTGAGGGTCTATACACTATACCTGTTATTGTGCGGCGCGCCCATGCGCAACGATTCACACTACAAGCGCAACCGTCCAAAGGGCCGCGCGCCGCACAGGCCGGGCCCCAGCCTGCTGTGCGAGGTCTGCGGCAAGAGCTTCCTGGTGAGGGTCTATACACTATACCTGTTATTGTGCGGCGCGCCCATGCGCAACGATTCAAACTACAAGCGCAACCGTCCAAAGGGCCGCGCGCCGCACAGGCCGGGCCCCAGCCTGCTGTGCGAGGTCTGCGGCAAGAGCTTCCTGGTGAGGGTCTATACACTATACCTGTTATTGTGCGGCGCGCCCATGCGCAACGATTCAAACTACAAGCGCAACCGTCCAAAGGGCCGCGCGCCGCACAGGCCGGGCCCCAGCCTGCTGTGTGAGCTGTGCGGGAAGAGCTTCCTGGGTGCCTCCCTTCTCAATCAACACATGAACACACACACCAGGGTCAAGCCACATTATACGTGCGATTTCTGTAACAAAAGTTTCTCCAGTCTATTGAGATTAGGGTGCCACCTATATCGTCACAGCGGCGTCCCGCGCCGCTACCCGTGCGGTGTGTGCCGCAAAGACTTCTCGTCCTTGTCAAGCCGCCTGCGACACATGCGGATACATAACCCTACAAAAAGGCCCTGGTATACGTGCGATATATGCAACAAGTCATTCACTACCCGCGACGCCAAGGTTAACCACGTGACGCATGTACATGACAAAGTGCCGTGGCCCAAGCGGCACCGACCACAGAGACGCGGGCGCAAGCGGGAACGCAACGAAGACTACAGCCATTCGCAGAACGCCAGTGACGCACATGACGCCAGTGTAGCGGGCACTCATGACGCCAATGTAGCGGGCACTCATGACGCCAATGTTGCGGACACTGATGTTGATGAGTGGTGA
- Protein Sequence
- MEEEYSSDIKGNNDMTRVKYDKTGATDFDVVHEEDSTIYSEEEYSSGEIENTDMKRVNYDDYEKDSTYSDVEYLSETDDSQSDVHAINNIKQDKLNYDNIKNAIVNDDVQVNNTNNDDVPNNCDPGLTENNVQVINEDQLDEVDDDIIMNPNISNDFLNDEDVVLMIIGSADEVKSLEDDNKNDIDDSVENGFGDNTNNNNNVLLKNKYENPLNRLKDENRSKNRVILRNVIFLQESLPVEQDFVPSIDEASDSLRVLRVYSNKRCKNMNNTQNSKPIEQNKEFVPTIDKTNRQQCLRKHGKWECAICGIHHKTRPRLGNHVKSHAERYRCKMCNFVTGFSKKSSYFSHVRLKHPSDFACPLCGFSFVSEHGVKLHLVMVHRSEDVQNLSGPSCAQCNVRFASEAAYDTHMAVSPKHVSSGAPMRNDSNYKRNRPKGRAPHRPGPSLLCEVCGKSFLVRVYTLYLLLCGAPMRNDSHYNRPKGRAPHRPGPSLLCEVCGKSFLVRVYTLYLLLCGAPMRNDSNYKRNRPKGRAPHRPDPSLLCEVCGKSFLVRVYTLYLLLCGAPMRNDSNYKRNRPKGRAPHRPGPSLLCEVCGKSFLVRVYTLYLLLCGAPMRNDSNYKRNRPKGRAPHRPGPSLLCEVCGKSFLVRVYTLYLLLCGAPMRNDSHYKRNRPKGRAPHRPGPSLLCEVCGKSFLVRVYTLYLLLCGAPMRNDSHYKRNRPKGRAPHRPGPSLLCEVCGKSFLVRVYTLYLLLCGAPMRNDSHYKRNRPKGRAPHRPGPSLLCEVCGKSFLVRVYTLYLLLCGAPMRNDSNYKRNRPKGRAPHRPGPSLLCEVCGKSFLVRVYTLYLLLCGAPMRNDSNYKRNRPKGRAPHRPGPSLLCELCGKSFLGASLLNQHMNTHTRVKPHYTCDFCNKSFSSLLRLGCHLYRHSGVPRRYPCGVCRKDFSSLSSRLRHMRIHNPTKRPWYTCDICNKSFTTRDAKVNHVTHVHDKVPWPKRHRPQRRGRKRERNEDYSHSQNASDAHDASVAGTHDANVAGTHDANVADTDVDEW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -