Oiva039329.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- RTase
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000026.1:14486474-14509450[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.3 30 6.8 0.3 3 21 554 572 553 577 0.93 2 15 4.6 4.7e+02 3.0 1.1 2 23 609 631 608 631 0.93 3 15 0.012 1.2 11.2 3.8 3 23 649 669 647 669 0.96 4 15 3.3e-05 0.0033 19.2 1.5 1 23 675 697 675 697 0.99 5 15 0.027 2.7 10.1 0.7 1 19 704 722 704 723 0.94 6 15 0.037 3.7 9.6 0.9 1 19 748 766 748 767 0.93 7 15 0.027 2.7 10.1 0.7 1 19 792 810 792 811 0.94 8 15 0.027 2.7 10.1 0.7 1 19 836 854 836 855 0.94 9 15 0.027 2.7 10.1 0.7 1 19 880 898 880 899 0.94 10 15 0.027 2.7 10.1 0.7 1 19 924 942 924 943 0.94 11 15 0.027 2.7 10.1 0.7 1 19 968 986 968 987 0.94 12 15 0.037 3.7 9.6 0.9 1 19 1012 1030 1012 1031 0.93 13 15 0.00019 0.019 16.9 0.2 1 19 1056 1074 1056 1075 0.97 14 15 0.026 2.7 10.1 1.2 1 19 1100 1118 1100 1122 0.91 15 15 0.0074 0.74 11.8 0.7 1 23 1128 1151 1128 1151 0.93
Sequence Information
- Coding Sequence
- ATGTGTAATCTATCCGGTTTGAAACAACAAAACACCATATCAAACAGCAAGCTTAATACCTTAGACCTTTTATTTAGCAACATCGACTTTGATGTTCATCATTGCACGAACCCCCTTGTTCCGGAAGACGTATATCATCCTTGTCTAGAATTTAATCTCTCTAATCTGTTAGTTAGAAATGCTCGCCAAAAACCAATCAAAAGGCCCAACTTTTTTAAAGTTTGGTTTTCCAAGTCCTTAATTCACATAGTGAAAGAAAAGCACCGTAAGCATAAAAAATGGAAGGAAGGTGGGAATCCTCGCGACTACGATGAGTTTGCTATGCTCAGGGCTAGGCAAAAAGCAGTTCAAAATAAGTGTTATATGTCTTACACTCAGCGAATGCAAGACTATATCCGCAAAGACCCCAAGCTTCTTTTTTCTTATATCAAAACCCTGAGAAATAATGAAAAAGGATACCCCGAAAAGCTTACGTTAGGACATACTACGTACACTGATGAAACCTCAGCTTGCAATGGTTTCAGTCAGTATTTCGAGAGCGTTTTTGTAAAACCGGCAAACTCGTACGACAACTATGAAACAAACTTAACAACTTTGAACCATAATGAATCTATCTGTAAAATTAAGATTGTCGAAGATGACGTCCGTAAAGTTCTTAAAGGTTTAAAAACTAACAAGGGTTCAGGCAGTGATGGCATTCCACCAATATTCCTTAACAAGTGTGCAAATAATTTAGCTAAACCACTGTCCATAATTTTTAACTTGTCCATTAACGTTTTCGGTTGTTTCCCTGATATATGGAAAGAGGCATTGATAGTACCTATTCATAAAAGCGGATCGAAAACTCAAATAGAGAATTATCGGCCTATCTCTATTCTCAACGTTATGAGTAAAATATTTGAAACTGTAGTCTATAGGTACATAAGCCCCATAATAACTAGATCGATTCCCAACGAACAGCACGGTTTTATGAAAAACCGTTCTACCGTTACAAACTTAGCTGTTTTCACAGACTATGTGTTGAGGAGCATGGACGAAAGATATCAAGTGGACGTGATCTACACGGATTTCGAAAAAGCTTTCGACCGCGTGGATCATGTAATCCTACTCCAAAAACTAAGCGTGTTAGGCATAAACGGGAGTTTGCTTCGGTGGATGACTTCTTATATTAAGAACCGTATGCAGGCTGTGGTGACGGGTAGTGCTAGAAGTGACTTTGTTGCAATACCGTCAGGGGTACCTCAGGGGTCCATCCTTGGTCCCCTTTTATATAACGCTTATTTATTCGATATTGGTAGCTGCTTTCGCCATGCGCAATACTTAATGTTCGCtgacgacaaaaaaatattcctcAAAATACGCTCCCCCGAAGATTCTCAAAATTTACAGAAAGACCTTAATGCTTTGGTAGAATACTACGCTAAGAATAGAATAATAGTTAATGTAAAGAAGTGCCATCACATAACTTTTACTCGTAAATTAAGCTCAGTAACCTATAACTACACAATTGATGGTGTTTGTATTCCTAGGGAAACTACAATTAGAGATCTAGGTATTCATATTGACATTAAACTCTCTATGAATGACCATATAGATATCGTGGCTAATAGAGCCTACAAACAACTGGGTTTTATCAAACGGAACCCAGACGGTCCGCTCTGCGAGGAGTGCAACCTGCGCTTCGCATCCGACGAAGCGTACCGTCATCACTTGGAGGTGTCGCCCAAGCACGCCGCTGACGGAAAAAGAAAACTCAACGCTCCCAAACAACAAAGGGGCAAACGAAACGACAACGGTCAAAAGCGTAAATCCTATGTTACCGTCACTTGCGAAGAGTGCGGCGAGCAAATCAAAGGGGCCGGGAGATACCACCATCATTTCCGAGTGTCACACCCAGACAAAACTGGCACCCAGTACATTAAGCGCGGGCAAGCGATTTGCCTCTGCGACCAGTGCGGGAAGTATTTTAcgACCATTCACGCGTTGCGAGATCACAAGCTATCGCACACGGGCAAGAAGGAGTTCCAATGCGACGTGTGCAAGAAGTTGTTCTACTACAAGTCGGCGCTCGTGACGCACATGAAAATGCACAGCGAGGAGCCGCCGGTGTACGCGTGCGCCGTGTGCGACAAGAAGTTCGTCAACAAGGCCAACTGCAACAGGCACGCGTGGGTGAGTCACTTCTGCCTCGAGGCGACGCTCGTGACGCACATGAAGACGCACAGCGAGGAGCAGCCGGTGTTCGCGTGCGCCGTGTGCGACAAGAAGTTCGTCAACAAGGCCAACTGCAACAGGCACGCGTGGGTGAGTCACTTCTGCCTCGAGGCGACGCTCGTGACGCACATGAAGACGCACAGCGAGGAGCAGCCGGTGTACGCGTGCGCCGTGTGCGACAAGAAGTTCGTCAACAAGGCCAACTGCAACAGGCACGCGTGGATGAGTCACTTCTGCCTCGAGGCGACGCTCGTGACGCACATGAAGACGCACAGCGAGGAGCAGCCGGTGTACGCGTGCGCCGTGTGCGACAAGAAGTTCGTCAACAAGGCCAACTGCAACAGGCACGCGTGGGTGAGTCACTTCTGCCTCGAGGCGACGCTCGTGACGCACATGAAGACGCACAGCGAGGAGCAGCCGGTGTACGCGTGCGCCGTGTGCGACAAGAAGTTCGTCAACAAGGCCAACTGCAACAGGCACGCGTGGGTGAGTCACTTCTGCCTCGAGGCGACGCTCGTGACGCACATGAAGACGCACAGCGAGGAGCAGCCGGTGTACGCGTGCGCCGTGTGCGACAAGAAGTTCGTCAACAAGGCCAACTGCAACAGGCACGCGTGGGTGAGTCACTTCTGCCTCGAGGCGACGCTCGTGACGCACATGAAGACGCACAGCGAGGAGCAGCCGGTGTACGCGTGCGCCGTGTGCGACAAGAAGTTCGTCAACAAGGCCAACTGCAACAGGCACGCGTGGGTGAGTCACTTCTGCCTCGAGGCGACGCTCGTGACGCACATGAAGACGCACAGCGAGGAGCAGCCGGTGTTCGCGTGCGCCGTGTGCGACAAGAAGTTCGTCAACAAGGCCAACTGCAACAGGCACGCGTGGGTGAGTCACTTCTGCCTCGAGGCGACGCTTGTGACGCACATGAAGACGCACAGCGAGGAGCAGCCGGTGTACGTGTGCGCCGTGTGCGACAAGAAGTTCGTCAACAAGGCCAACTACAACAGGCACGCGTGGGTGAGTCACTTCTGCCTCGAGGCGACGCTCGTGACGCACATGAATACGCACAGCGAGGAGCAGCCGGTGTACGCGTGCGCCGTGTGCGACAAGAAGTTCGTCAACAAGGCCAACTGCAACAGGCACGCGTGGACGCACAAGGAGCGGAAGCCGTATCCGTGCCACGCGTGCGAGAAGTCGTTCCCCAACGCGACAGCGATGCGCACGCACGTGGAGCACGCGCACCTCAAGAAGCCCTACCCCAGGAAGACGCACGGCCCGCGCCAGCGCGCCAGCCGCGCGCGCCATGTCAAGGAACCCGTCTGCGGCACCATATGGCCCAAGGTGGAGCAAGCTGCCACAGTCGAGGTGTCTCAACAGTAA
- Protein Sequence
- MCNLSGLKQQNTISNSKLNTLDLLFSNIDFDVHHCTNPLVPEDVYHPCLEFNLSNLLVRNARQKPIKRPNFFKVWFSKSLIHIVKEKHRKHKKWKEGGNPRDYDEFAMLRARQKAVQNKCYMSYTQRMQDYIRKDPKLLFSYIKTLRNNEKGYPEKLTLGHTTYTDETSACNGFSQYFESVFVKPANSYDNYETNLTTLNHNESICKIKIVEDDVRKVLKGLKTNKGSGSDGIPPIFLNKCANNLAKPLSIIFNLSINVFGCFPDIWKEALIVPIHKSGSKTQIENYRPISILNVMSKIFETVVYRYISPIITRSIPNEQHGFMKNRSTVTNLAVFTDYVLRSMDERYQVDVIYTDFEKAFDRVDHVILLQKLSVLGINGSLLRWMTSYIKNRMQAVVTGSARSDFVAIPSGVPQGSILGPLLYNAYLFDIGSCFRHAQYLMFADDKKIFLKIRSPEDSQNLQKDLNALVEYYAKNRIIVNVKKCHHITFTRKLSSVTYNYTIDGVCIPRETTIRDLGIHIDIKLSMNDHIDIVANRAYKQLGFIKRNPDGPLCEECNLRFASDEAYRHHLEVSPKHAADGKRKLNAPKQQRGKRNDNGQKRKSYVTVTCEECGEQIKGAGRYHHHFRVSHPDKTGTQYIKRGQAICLCDQCGKYFTTIHALRDHKLSHTGKKEFQCDVCKKLFYYKSALVTHMKMHSEEPPVYACAVCDKKFVNKANCNRHAWVSHFCLEATLVTHMKTHSEEQPVFACAVCDKKFVNKANCNRHAWVSHFCLEATLVTHMKTHSEEQPVYACAVCDKKFVNKANCNRHAWMSHFCLEATLVTHMKTHSEEQPVYACAVCDKKFVNKANCNRHAWVSHFCLEATLVTHMKTHSEEQPVYACAVCDKKFVNKANCNRHAWVSHFCLEATLVTHMKTHSEEQPVYACAVCDKKFVNKANCNRHAWVSHFCLEATLVTHMKTHSEEQPVYACAVCDKKFVNKANCNRHAWVSHFCLEATLVTHMKTHSEEQPVFACAVCDKKFVNKANCNRHAWVSHFCLEATLVTHMKTHSEEQPVYVCAVCDKKFVNKANYNRHAWVSHFCLEATLVTHMNTHSEEQPVYACAVCDKKFVNKANCNRHAWTHKERKPYPCHACEKSFPNATAMRTHVEHAHLKKPYPRKTHGPRQRASRARHVKEPVCGTIWPKVEQAATVEVSQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -