Oiva013505.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000008.1:26342934-26355697[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.23 23 7.1 3.1 2 23 794 815 793 815 0.96 2 9 0.008 0.8 11.7 1.3 1 23 862 885 862 885 0.96 3 9 0.057 5.7 9.0 0.1 3 23 892 912 891 912 0.97 4 9 6.6e-05 0.0067 18.3 4.5 1 23 918 940 918 940 0.98 5 9 0.0032 0.33 12.9 0.6 1 23 945 967 945 967 0.96 6 9 9.5e-06 0.00095 20.9 1.5 1 23 976 998 976 998 0.99 7 9 7.1e-06 0.00071 21.3 0.7 1 23 1004 1027 1004 1027 0.95 8 9 0.39 40 6.4 0.4 1 13 1033 1045 1033 1056 0.82 9 9 2.3 2.3e+02 4.0 4.0 1 23 1064 1087 1064 1087 0.93
Sequence Information
- Coding Sequence
- ATGTTACACAACACGGGCCCTTTCGGGCCGAACGACGCACCGGTGAATGTGAATCCACAATCAAACATGACCTCTATGAGTGGAAGGATGGGTATCGGGAATAACGTAAATAACCTGGCGAAAATACCGCAACAATCGCCTCAGCCGCCGAACCCGCACTTCAACATACCGGATTATCCGACCTACGGCTTGAATGTGAACCCAGGTTTGAGCccatttcaaaattttcaccaTGTTGGTTTTCAACAAAATTCGATTCCCCAAAGTTCGATCCATGACAGCTGGCAGAACAACATGTTGCCTATGAACTTGAACATGCAGAGCGAGCATTCCATGCTAGGCTTCGCTCAATATggcaagcccgacatgagtgaACAGAGCTTCAACAAAAGCATGCTGAATGTACCACAAGTACACACAAAGGCCTTCCACAAACAAATGGGTATGGACGTGAACTACCCCTACAACTTGAACCCCAGCTATCGACCATACACTGACTACAATTTAGATTTGAGTGCAAAACCCAAAAGTGATGATGTCCGGCATTTCCTTGACCCAAATAGCAGTAAGGAACGGGTAACATTGAGTCCACACTATTCCGAACAGATTGACTTGAGTAATAAACAGAAGATGCATAATTTCACACGACCATATTTAGAAACAGCTACTGCAAAATCACTGATCCCTCAAAAGCATGAAAATagtgtaaatataaataatgattTAAGTCTGCAACTACAGAGGTCAAAAGAGAAACATCCTTATTACGACAATATAAGCAGTATAAAATCTCAATTGAGTTTGGACAACAGATATGGGGAAAGTGAATTAGACTTATCCAAGTCTCTGAAACCTATTAACTTAAACAGTAACTACCAGAACCTAAGTGCAGATCATAGGTTTTATAAGGATCAAGAGTTAAGGGTGCCGAATGATTCCTTGCCTAGGTTTCATCTACCCAGCAATTTGAACTCCAATTTCTCGAGTATGACTCCAGACCCAAGGATGTACAAGGAACCAGATCATATACCCCAGAATTTAGAAAAGATTCTAGGCAAGCCACAACCTGAAAACTTAAATACATCTTATATAAGTGTCAATTCAGATCTCAGATATTATAAAGACAGAGAGTCCAGGTCGCAAAATCTAGAAGCCATATTGGCCAAAACTCAAAAACCTGAAAACTTAAAcacaaattttttaaaacctgaaaatttaaacatgaatttttcaAAACCTGAAAATTTAAACATTAATTTCTCGAAACCTGAAAATTTAAACACTAATTTCTCAAAACCTGAAAATTTAAACACTGATTTCTCAAAATCTGAAAATTTAAACACTGATTTCTCAAAATCTGAAAATTTAGATACTAACTTTTCAAACCCAACTTCTGGAACTGGATTTCTTAGTGAAACAAAATTGAGGTCCCAAAATAATAAAGATGTATTACCTAAATTTGCACAAAATGAAGCTGATTTGACTACTACCACTAGTTCAACAAAAGTCAGCTCTGACATACAGGAGTATAAGGATAAAGATACAAATCCGCAAAATTTAGAAAAAGCTCTGCCAAAGCCTCAACAAGCTGAAAACTTAATAACCAATTACCAAGGTATTAACTCAGATTTAAGGTTTTATAAAGACCAAGACTCAAGACGCAGAAGTTTGGAGAATACAGTCAAGATGATTGAGAACATACTCTCACATTCGTCAAACTCGAGAAAAAGTTCCTCTAACTCGTATCCTGGTAAATGTACAGATACCAAACAAAGTACTGAGACAGAGGAAAAAGAAAAATCTCAAATAAAAGATGCTGAAAATGATAGTTTAAACAAAAGTGACATTAACACAACAGGTGATGGCGACTCCAGTATTGACAATTTGTCAAATTGTGACAAAACTGATGAATCTGCTGCAAATACCAGCAATGAATTAGATGACAATGCAAATGAAGATGATGAAATGGATGATAAAAATCAGAGTAATGTTGAAAGTGAATCAGAAATTGATGACATAGATCATGAAGCTAAAGACCAAAGTGTGAAAGAAACAGCAACTACTAACAATATGAATTTTAAACCAGAGGATGTCAAATCGGAGTCTGAGGATTCATCATCGGATGAGGATGTGAAACCAAAAGATCTCTTAGATGAAAATGACATTAAAAGAGAAAATAACGCTGATGACTCAGTTGTTGTAAAAATTGAACTGATCCCAAGTCTTGTTGATATGGAATATATGAATCCCTTTTACAGAGATGTTTTCGGAGTGCAAAGTGATGATACAGGGAATCATGATATTATTGATTCGGAGACCAGTATTACAGTTGCCAAGGAAGTTATAAGGAATgGAGCGACAATCGAAGCAGCATATTTGGAATGCCCCCACTGTAGTCTCTATTTCAACCACCCGAAGAGGTTCCTCATCCATACAAAGTGGCACTCCTTTGGGCTTACCAACGAGAAGAGAATGGAGCTGCAGAGGGAGAAGGAAATGAGAAAGCAGATGCGGAAAGAGGCGCGTCTGATAGAGAGGATGAATCTGAGTGAAGTGAGTGACGTCACTGCACCGGGGAGGAAATTCAACTGCAGGGACTGTGATAAGGTGTTCCTGGCCAAGGCCAGTCTGAAGAACCATAGGCAGCGATATCACCCAACACGCATCCGCGATTGCAAGATCTGCGGCAAGACCATCCTAGGCTGGATGGCGTTACGGACACACATGGCCACGCACACTTGCGAGTCCGGCTATCAATGCGACAGCTGTCCAAAGCGCTTCAAACACCCGCACTCGCTGGCCAAGCACCGCGACACGCATCTGGAGAAAACACACGCGTGCCCGCAATGCCCTAAGAAATTCGGCTCGGTGATGTTGCTGAACGTGCACTCGAAAACACACGAGCGCGCGCTGCGCGGCGCCACCTTCCGCTGCACCTACTGCGGGAAAGGGTTCTTCGAGTCCTACAGCTTACAGGTGCACGAAAGGACGCATCGCAACGAGCGGCCATACTTGTGCGAGATATGCAACACGAGTTTCGGCACCAACTCCAGTCTGAAGAGACATTTGAAAGTCTCCCACAGCACGTCTAAGCCGTTCGAGTGCTCCACCTGCCATCGCTCCTTCATATCGGAGGCTATCCGCGATCGGCACGCGATGCGTAACCATGGCAACCCGGAGGACTTCAAGTTTCTGTGCAAGCAGTGCCCGTGCAAGTACCTCAAGCTAAAGGACTTGAGGAAACACATGTACAAAGTACATCCCAAAGGCAAGAGGAAGAAAAAGGGGCAGTCCGAATCCGAGTAA
- Protein Sequence
- MLHNTGPFGPNDAPVNVNPQSNMTSMSGRMGIGNNVNNLAKIPQQSPQPPNPHFNIPDYPTYGLNVNPGLSPFQNFHHVGFQQNSIPQSSIHDSWQNNMLPMNLNMQSEHSMLGFAQYGKPDMSEQSFNKSMLNVPQVHTKAFHKQMGMDVNYPYNLNPSYRPYTDYNLDLSAKPKSDDVRHFLDPNSSKERVTLSPHYSEQIDLSNKQKMHNFTRPYLETATAKSLIPQKHENSVNINNDLSLQLQRSKEKHPYYDNISSIKSQLSLDNRYGESELDLSKSLKPINLNSNYQNLSADHRFYKDQELRVPNDSLPRFHLPSNLNSNFSSMTPDPRMYKEPDHIPQNLEKILGKPQPENLNTSYISVNSDLRYYKDRESRSQNLEAILAKTQKPENLNTNFLKPENLNMNFSKPENLNINFSKPENLNTNFSKPENLNTDFSKSENLNTDFSKSENLDTNFSNPTSGTGFLSETKLRSQNNKDVLPKFAQNEADLTTTTSSTKVSSDIQEYKDKDTNPQNLEKALPKPQQAENLITNYQGINSDLRFYKDQDSRRRSLENTVKMIENILSHSSNSRKSSSNSYPGKCTDTKQSTETEEKEKSQIKDAENDSLNKSDINTTGDGDSSIDNLSNCDKTDESAANTSNELDDNANEDDEMDDKNQSNVESESEIDDIDHEAKDQSVKETATTNNMNFKPEDVKSESEDSSSDEDVKPKDLLDENDIKRENNADDSVVVKIELIPSLVDMEYMNPFYRDVFGVQSDDTGNHDIIDSETSITVAKEVIRNGATIEAAYLECPHCSLYFNHPKRFLIHTKWHSFGLTNEKRMELQREKEMRKQMRKEARLIERMNLSEVSDVTAPGRKFNCRDCDKVFLAKASLKNHRQRYHPTRIRDCKICGKTILGWMALRTHMATHTCESGYQCDSCPKRFKHPHSLAKHRDTHLEKTHACPQCPKKFGSVMLLNVHSKTHERALRGATFRCTYCGKGFFESYSLQVHERTHRNERPYLCEICNTSFGTNSSLKRHLKVSHSTSKPFECSTCHRSFISEAIRDRHAMRNHGNPEDFKFLCKQCPCKYLKLKDLRKHMYKVHPKGKRKKKGQSESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00953894; iTF_00802286; iTF_00955055;
- 90% Identity
- iTF_00802286;
- 80% Identity
- -