Oiva039467.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000026.1:16226254-16238633[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.08 8 8.6 6.5 1 23 438 460 438 460 0.98 2 11 0.001 0.1 14.6 1.4 1 20 467 486 467 489 0.94 3 11 2.4 2.4e+02 3.9 5.4 1 23 493 515 493 515 0.98 4 11 0.011 1.1 11.3 4.9 1 23 520 543 520 543 0.97 5 11 0.012 1.2 11.2 0.1 2 23 548 570 547 570 0.95 6 11 0.08 8 8.6 0.1 2 21 583 602 583 603 0.94 7 11 0.032 3.2 9.8 0.9 2 23 631 653 630 653 0.96 8 11 1.1e-05 0.0011 20.7 0.1 3 23 668 688 667 688 0.97 9 11 3.9e-06 0.0004 22.1 0.3 1 23 694 716 694 716 0.98 10 11 2.8e-06 0.00028 22.6 0.8 3 23 722 742 720 742 0.95 11 11 0.017 1.7 10.7 0.8 1 12 749 760 749 772 0.80
Sequence Information
- Coding Sequence
- ATGGCTACTTTTACAAACGAAGAGTATGCTGATATCATCTTTTGCTATGGGCTTTGTAATGGAGATGCTGCAGCAGCGAAAAAGGAATACGAGCGTCGTTATCCAAATCGTCGTGCACCCAATGATCGCGTCTTTTCTGGGACATTCCGCCGCCTTAGAGAAACTGGGAGCTTTCGAATAAGACGAAGTGATGCTGGTAGACCTCGCATTTACGATCCTCAGGATGAAGACGAAATACTCGAGCAATTTCAACGAGATCCCACAGTGTCTACTACAGTCGTGACCAGGCGTCTTGGATTTACTCAATGGAAGGTATGGTTCACAGTGCATACAGCGGGGTTGTACCCTTACCATTACACGCCTGTTCACGCTTTAGAGGAGGGAGACCCAGCAAGAAGAATTGACTTTTGCCGCTTCATTTTAGATAATGATGTAGAGAATCCTGAATATCTCAACAAAATTTTGTGGACGGATGAGTCCAAGTTTGATCGCGACGGAATCACTAACTACCATAATAGTCACTTTTGGACTCAAAAAGGTTCCAACCCaagaaagaaaaatgaaaaggcTCATCAATATCGTTTTTCTCTAAACGTATGGATGGGAATAATCCATGACAACCTCATAGGACCCTACTTTTTTCCCCAAAATTTAAATGGCGAAACGTATGAGAATTTTTTACGTAATGATATGGCGTTATTGCTGGAAGATGTCCCACTTGCATTGAGAAGGGAGATGATTTACCAGCACGACGGCTGTCCAGCCCACTTCCGCCGGGGAGTGCaggtgaaaaaagaaaaaattgtcTTTGAAGACACAGACCCTGTTTTAAATGTTAAGTGTGAAATTGAAGTGTTTAATGCTGAGATTTCAAAGGACAAAATTGATAATGAACTGCCGAATACATTAAATGATTTCAAAAATTCACATgtagatattgattttgatgattgTGATGATACTGATACTGATTGTGATACCTTGGGTATAGAACGAAAAAATTTTAAGGAAGAGGAgaaaattaacaataataaaattgtaaatgatgatagaagtaaaagtaatgtAAATGATGTTAAACTAAGAAAGcagattaaatcagaaaaacAGGTTCAAAAGAGTGTTACTAATGAAGTTCATACAAGTGAAGTTAAAAAGCATGTAAGAAAGAAAAGGGATCGTCCCACTGGTCTGAAGAGAGGTAGAAGGAAAATACACTTCAAACTGTTTCAAGAAATCGAGTTGACGCAAGAACAGCAAGTGGCTGAGATATTGAACAGAAAGAAGTCTAATAACTACAAGAATGCACTTCACAAATGCAGTGTTTGTTTCAAAGGCTTCCATCATTTGGAGGCTTACACGTCACATATGGATAGACATACTGATAAATTTGGTCTGTTCGAATGCGACATATGCCGGATGCGCTTCAAAAGCAAATTCACcctgaggaagcatgtgcccaaccacaaatatatatataaatgtaCGAAATGTCAGTTTGAGTCCAACCACAGAACCGCGGTGGTTCACCATAAACGCTGGCACGACGGCAAGACGTACAATTGTCCGCATTGCGAGGAGCAGTTCACTAAATGCACGTCATACATGTCTCACGTGCGTATAAAGCACCCTTCAGACTCTGTGTGCGCGCAGTGCGGCTTCTCGTTCATCGGAGAGCGGGGGTTGCGGATGCATATGGCCAAAAAACACAACCTCGTTAATGGCACGCAGAATTTAAGCGGCCCGTCGTGTGAGACGTGCAAAATTCGCTTCGCGTCCGAGGAAGCGTACAAGCAGCATTTGCAGGCGTCGCCCAAACACGCGCCTGCCGATCAGCTCAAGCCGAACTGCCCCGTCCAGAAGAAAATGTCCAGAAACACTGTAACGTCAACTTGCGAACTGTGCGGCACGCAGCTGAAGAGTGCTCGCCAGTACACTGTGCATTTTAAAACGCAGCATCCGGAACAGAAGCCGACACAGTATCCCCAGGCCCGTGAAATGTGTGAAAAGTGCGGGAAAGTTTTCACGTCGCCGGTATTTCTCCTCGAGCACATGCAAGTGCACACCGGGAAGAAGCTGTACAAGTGTGACATTTGTGGCAAGGGTTTCATGACCAAAGGCGCTCTGAAATACCACATAGATAGGCACAGCGACAACCTGGCATGCAGCGTGTGCCACAAGCCGTTCTCGAACCAAGCCAACCTGTCGCGACACATGGTGtcGCATCTTTCCGTGAGGCCGTCCTTTAAATGCGAGTACTGTGGCAAGTCCTACACGAGCATCCCCGGGCGCGACCAGCACGTGTCGCACGTCCACCATCACGTGCCCTGGCCCAAGAAGATCAACGGCAAGCGACACAGGGTCAACGCGCGGAGACTCAGTGTACACAGCGACTAG
- Protein Sequence
- MATFTNEEYADIIFCYGLCNGDAAAAKKEYERRYPNRRAPNDRVFSGTFRRLRETGSFRIRRSDAGRPRIYDPQDEDEILEQFQRDPTVSTTVVTRRLGFTQWKVWFTVHTAGLYPYHYTPVHALEEGDPARRIDFCRFILDNDVENPEYLNKILWTDESKFDRDGITNYHNSHFWTQKGSNPRKKNEKAHQYRFSLNVWMGIIHDNLIGPYFFPQNLNGETYENFLRNDMALLLEDVPLALRREMIYQHDGCPAHFRRGVQVKKEKIVFEDTDPVLNVKCEIEVFNAEISKDKIDNELPNTLNDFKNSHVDIDFDDCDDTDTDCDTLGIERKNFKEEEKINNNKIVNDDRSKSNVNDVKLRKQIKSEKQVQKSVTNEVHTSEVKKHVRKKRDRPTGLKRGRRKIHFKLFQEIELTQEQQVAEILNRKKSNNYKNALHKCSVCFKGFHHLEAYTSHMDRHTDKFGLFECDICRMRFKSKFTLRKHVPNHKYIYKCTKCQFESNHRTAVVHHKRWHDGKTYNCPHCEEQFTKCTSYMSHVRIKHPSDSVCAQCGFSFIGERGLRMHMAKKHNLVNGTQNLSGPSCETCKIRFASEEAYKQHLQASPKHAPADQLKPNCPVQKKMSRNTVTSTCELCGTQLKSARQYTVHFKTQHPEQKPTQYPQAREMCEKCGKVFTSPVFLLEHMQVHTGKKLYKCDICGKGFMTKGALKYHIDRHSDNLACSVCHKPFSNQANLSRHMVSHLSVRPSFKCEYCGKSYTSIPGRDQHVSHVHHHVPWPKKINGKRHRVNARRLSVHSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -