Oiva032273.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000021.1:18779758-18784020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0039 0.4 12.7 1.6 1 23 28 51 28 51 0.94 2 20 0.52 52 6.0 0.1 2 23 78 99 77 99 0.95 3 20 0.13 13 7.9 1.4 1 23 121 143 121 143 0.97 4 20 0.078 7.8 8.6 0.1 1 19 147 165 147 169 0.94 5 20 0.009 0.9 11.6 1.3 1 23 174 197 174 197 0.91 6 20 0.05 5.1 9.2 0.7 3 23 284 305 282 305 0.95 7 20 0.089 8.9 8.4 0.0 2 23 330 351 329 351 0.96 8 20 0.012 1.2 11.1 0.6 2 23 374 395 373 395 0.96 9 20 0.00075 0.076 14.9 0.5 1 23 399 421 399 421 0.97 10 20 0.00038 0.039 15.9 1.6 1 23 426 449 426 449 0.96 11 20 3.4 3.4e+02 3.4 2.8 1 23 509 532 509 532 0.95 12 20 0.21 21 7.2 0.1 2 23 558 579 557 579 0.96 13 20 0.003 0.3 13.0 1.7 2 23 602 623 601 623 0.97 14 20 0.013 1.3 11.1 0.0 2 23 628 649 628 649 0.96 15 20 0.0088 0.89 11.6 0.9 1 23 654 677 654 677 0.87 16 20 0.0041 0.41 12.6 4.4 2 23 685 707 684 707 0.96 17 20 0.001 0.1 14.5 0.8 1 23 714 737 714 737 0.98 18 20 0.065 6.6 8.8 3.8 1 23 743 765 743 765 0.98 19 20 3.2e-05 0.0032 19.3 1.3 1 23 771 793 771 793 0.99 20 20 3.3e-05 0.0033 19.2 4.0 1 23 799 822 799 822 0.98
Sequence Information
- Coding Sequence
- ATGGACCAACACAGAAACAATATCATAGTCGTATTACAAAACACAAATGCAACCCCATTCGAAAGACAAGGCGAAATCGCTTACACttgttatttttgcaaaagcGTATACTCAAATCCGAGAGAATTGAAGAGACATACACTCGAAACCCATAATAATGATGATTATAACGAGATTTGTAAAGGAAAATCGTTGCGCTACTACCTTGTGAAATTAGACATAACTGACTTAATCTGCAGAATTTGCAATGAAGAAATAATCTCGCTAGAAAAATTGTTTGACCATCTAAAATATCATGGCAAAACAATATTCAGAGatataaataatagaataatacCTTTCAGGTTCGACAGTGATAATCATATATGTACAATTTGCTCGGTTGAGTATAATAAATTCAAGCCTTTACGCGATCACCTCAACACCCACTTTAGGAATTATGTTTGTAAATTCTGCGACGCTGGTTTTATTACACTGGGTATGCTATCTTCGCATGAGCCGAGCCATAAAACTGGCGTGTACACGTGTCGTTATTGTGACAAAAAATTCAATTCGGATAAAAATAAAGAGGTGCACGAGACTGTAATACATGCAGATTTCGTTGAGAATGTAAAGAGAAAGGGAATACAACACGAAAAAGGTAATATCGCACATGATCCTAAAGAAAGAAGGAAGAAAGGAGCAAAAGAAGATTTATCTGATGAATCCAATGAACAAATTACAGATACAACTAAATCTGCAGGATTGAGTCGAAAGACAGCAAAGGATAAGCATCGTGATAatatatttgttgttatagagaACACAAACGCAACGCCTATCGGTAAATGTAATGATACTGGATACGGCTGTCAGTATTGCCCGAAAAAATATCTAAACCCCAGAGATTTAAAGGACCACACATCAAAAACTCATGCCAGCGCCGATTCCTTAAACATTTGTACGCGTGTAGACTCCTATATTGCCAAACTAGACATCACAGATTTAGTTTGCAAGGTTTGCAACAGTGGCGTCCAAGATTGGGATGAATTATTCAACCACTTAGAAAGCCATGGCAAAGTGATTCACAGAGATATAAAAAACCACATCATACCGTTCCAATTTGATGGAGATAAACTTGTGTGCGCGATTTGCCGCAGGGGTTTCAACAAATTTAAAGTTCTCCGTGAACACATGAATAGACACTTCAGTAACTATGCATGTAATGTTTGCCATTCTAGTTTCATCACCGAAAGAATGCTCTCCGCTCACATGCAGGGCCATAAAACCGGAGTTTTCCAATGCAGCTTTTGCGAGAAAAGTTTCAATACGAACAGAAATAAGAAGGCTCACGAGAACGTTGTTCACGTTCACTTCAACTACGCCAGCAAATGCGGCTTTtATCCCGGGAAGATAAAACCGAAACAGAAGAAGAATGGAAAAAACAACGCCGAAAAAGATGAGAGAAGCAAGCACATGGATAACATAACCACCCTTTTCAAACACACCAACGCCACACCCTTACGCTGTCAGAAGGACATAGGATACGCATGTTGTTTCTGCGCACAATATTGTGAAAAGCCTGCAGATCTAAAAGAGCACACAAGACTATCTCATCGCTCCGATATACAGAATATTATGAGAAGGAAATCAGTGAACGACTATTATGTCAAACTTGATATAACTGGCTTGCAATGCAACGAATgcaataccaaaatagataatttaGAAGACATGATGCTTCATCTTCAGGAACACAACAAAGATATACATCTGGACATAAATAATCACATAATGCCTTTCAGTTTCGACGACGATGAACTGCGCTGCGTCATTTGCAAAGAGGAGTTCAACAAATTCAAGAAACTGACTGAACACATGAACAAACATTACAGAAATCGCGTTTGCGATGTCTGCGGCGCAGGTTTTATCAATGAAAAATCGTTTCAGATACATTCACAAGTTCATAGAATAGGCGTTTTCACTTGCGAATACTGTCAGAAAGTCTTCGATACTTCGATGAAGAAAAGGTCCCACGAATTAGCCGTACACATACACTCACAGATGGTGAGCAAATGCGGGTATTGCAACAAGAAGTTTAAATCGCACAGGGATAAACAGAAGCACATTTCTAGCGTGCATGGCGTACGTTTTAAGGAGTACAAATGCAAATTGTGTGGTAAGGACTACTTGAGCGCGAACTCTTTGCGAGTTCACACGAGGCGTGACCATTTGAAGGAACGGCCTTATCAGTGTCAGTTGTGTGATTTTACGTCGTTCGGTAGTAACTGTTTGAGGAATCACATGTTGAAGCATACAGGAGTCAGGGATTTCCAGTGCGATATTTGCTTGAAGTCGTATGGCAAGAAGAAGACGTTAAGGGAACATATGCGTATACACGCGAATGATAGACGATTCAAATGCGAGTACTGCGGACTGAAATTTATACAGAAATGCAGCTTAAAGGGACATATGCGGTCCAAACACAGAGACTTGCTGCCCGCGCTGCAGTGa
- Protein Sequence
- MDQHRNNIIVVLQNTNATPFERQGEIAYTCYFCKSVYSNPRELKRHTLETHNNDDYNEICKGKSLRYYLVKLDITDLICRICNEEIISLEKLFDHLKYHGKTIFRDINNRIIPFRFDSDNHICTICSVEYNKFKPLRDHLNTHFRNYVCKFCDAGFITLGMLSSHEPSHKTGVYTCRYCDKKFNSDKNKEVHETVIHADFVENVKRKGIQHEKGNIAHDPKERRKKGAKEDLSDESNEQITDTTKSAGLSRKTAKDKHRDNIFVVIENTNATPIGKCNDTGYGCQYCPKKYLNPRDLKDHTSKTHASADSLNICTRVDSYIAKLDITDLVCKVCNSGVQDWDELFNHLESHGKVIHRDIKNHIIPFQFDGDKLVCAICRRGFNKFKVLREHMNRHFSNYACNVCHSSFITERMLSAHMQGHKTGVFQCSFCEKSFNTNRNKKAHENVVHVHFNYASKCGFYPGKIKPKQKKNGKNNAEKDERSKHMDNITTLFKHTNATPLRCQKDIGYACCFCAQYCEKPADLKEHTRLSHRSDIQNIMRRKSVNDYYVKLDITGLQCNECNTKIDNLEDMMLHLQEHNKDIHLDINNHIMPFSFDDDELRCVICKEEFNKFKKLTEHMNKHYRNRVCDVCGAGFINEKSFQIHSQVHRIGVFTCEYCQKVFDTSMKKRSHELAVHIHSQMVSKCGYCNKKFKSHRDKQKHISSVHGVRFKEYKCKLCGKDYLSANSLRVHTRRDHLKERPYQCQLCDFTSFGSNCLRNHMLKHTGVRDFQCDICLKSYGKKKTLREHMRIHANDRRFKCEYCGLKFIQKCSLKGHMRSKHRDLLPALQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -