Oiva030370.2
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- rst2
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000021.1:4035318-4057093[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.083 8.3 8.5 0.4 3 23 145 165 143 165 0.97 2 19 0.0032 0.33 12.9 2.8 1 23 281 303 281 303 0.99 3 19 0.00024 0.024 16.5 0.9 1 23 309 332 309 332 0.96 4 19 0.61 61 5.8 0.9 1 13 337 349 337 351 0.91 5 19 0.00024 0.024 16.5 0.9 1 23 355 378 355 378 0.96 6 19 0.61 61 5.8 0.9 1 13 383 395 383 397 0.91 7 19 0.00024 0.024 16.5 0.9 1 23 401 424 401 424 0.96 8 19 0.61 61 5.8 0.9 1 13 429 441 429 443 0.91 9 19 0.00024 0.024 16.5 0.9 1 23 447 470 447 470 0.96 10 19 0.027 2.7 10.1 4.8 1 23 475 498 475 498 0.94 11 19 4.4e-07 4.4e-05 25.1 1.0 2 23 658 679 657 679 0.98 12 19 0.00093 0.093 14.7 2.7 1 23 685 707 685 707 0.98 13 19 0.014 1.4 11.0 1.2 1 23 831 853 831 853 0.95 14 19 0.0021 0.21 13.5 2.1 1 23 859 881 859 881 0.96 15 19 0.015 1.5 10.9 4.1 1 23 890 912 890 912 0.98 16 19 0.00023 0.023 16.6 0.6 2 23 959 980 959 980 0.97 17 19 0.1 10 8.2 5.5 1 23 997 1019 997 1019 0.95 18 19 8.4e-06 0.00085 21.1 0.5 1 23 1025 1047 1025 1047 0.97 19 19 9.6e-07 9.7e-05 24.0 3.1 1 23 1053 1076 1053 1076 0.98
Sequence Information
- Coding Sequence
- ATGAATAATCAAATGGCATCAGATGTGGATCCCTTGAGTAATTATAATTTGAATAACTTTCCcattttggataattttggaAATCCAATGTTGCCTTTTGGCAATCAATACCAGTACACGGTGAAAGTGGAGGAATTTCAGAATCCTAATTTTTACAATCTACCGCAAGGAGTACCACCTAAATGTACCCAAGAAACTGAGGAAAACACTAGTTTAAATCCCACTTTAGAAGATGCTGGTAATGAAACTGAGACACAGGTCACAGAACAGAATCAAAGTAACGAAGACATAAACAATGTAAATAACACTGAGGAAGAAGACATCAAACCAGACATCACAGACAATAAATTgctgaagagtaaaaaaattaaaaaagaaaggaGTAAATACTTCTCCGAAAAGATTAAGGAGAAAGATTTCAAATTCTACGGATGTTCCgtgtgtaatgtgaacttcaaGGAACTACATGAATTAGACAATCACGTCGCCACGCATAAAGACAGACTGACGAGCTATGATTGGAGAGTCAAGAACcagattaagaagaagaaaatgaagaaagagctgaagaagaagaagaagttaatGAAGAATGTCAAGATGGAGCCTGAAGTCAGAGAATTTGATATTGAAATTAAGCCGGAAGATGGATACatagGTAATGAAAAAGCATCCGACTTTGTCAACAACACTGAATCAGACAACCAGAGTTCTAAAGAGAACAATGGAGAGCTGAGCAAGAACACAACGGAGGCCTCTAACGAGAGCAAGAGACAAGATGCGCCGACGACgggagcgagcgaagcgacgcAACAGGAAATGTTGAACTTGCAGAAGATATACAAGTGCTTTGCGTGCCAGAAACAGTTCACGCTGAGTTATTACTTGAAACTGCACGTCAGATCCCATACAGATGAGAAGCCGTACACTTGCGCGCAGTGCGGCCAGTCGTTCATAACGGCGAGCAAGCTCGGGCGCCACAACAAGCGCTTCCACCTCGCCATCAGATACCAGTGCAGGATCTGCTATAAATACTTCTCCAGACCCGTAGATGAGAAGCCGTACACTTGCGCGCAGTGCGGCCAGTCGTTCATAACGGCGAGCAAGCTCGGGCGCCACAACAAGCGCTTCCACCTCGCCATCAGATACCAGTGCAGGATCTGCTATAAATACTTCTCCAGACCCGTAGATGAGAAGCCGTACACTTGCGCGCAGTGCGGCCAGTCGTTCATAACGGCGAGCAAGCTCGGGCGCCACAACAAGCGCTTCCACCTCGCCATCAGATACCAGTGCAGGATCTGCTATAAATACTTCTCCAGACCCGTAGATGAGAAGCCGTACACTTGCGCGCAGTGCGGCCAGTCGTTCATAACGGCGAGCAAGCTCGGGCGCCACAACAAGCGCTTCCACCTCGCCATCAGATACCAGTGCAGGATCTGCTATAAATACTTCTCCAGGTTTGAATTCTTAACCCGACATTTTGACAAAAAGCATCCAGACGATAAATTAGAAGGAGAACCATACGATTTCAACGCAATATTACCCTACCTAAAGGAGTTAGAGGAACAATTGCGCGAGAAAGCTGAAAAGGAGAAAGCCTCATCAAAACCGGACGATCCTTGGTTGGACGCCCTCGACGCTGAAGCCAAGCACGAACCTGATGAAGTGAAGGAGGAAGCCATTGAGGAGAAAGGATATATTACTGTGGTGATGGAACCCATGAAGGTCGATGTAGATGAAGTGGAGGTTAAGGTGGAGGAAATGGGTGGGGAGACACGTGGCGATGATGGTGATGGGGACAtccgtgatgatgatgatggattcGGTGGTGATGATGTGAAAGACGAGAGCTGTGGCATGAAGGATGAGATTCCCTCGGACGAAGACTACTTCCCCTCAAACACGTGGGCATCCAAACCAGTAGAAGACCCCCCGTCTCGATCGCCGAAGAGCAACCCCTCAGACCGCGTCAAGTGTCCGGTGTGCGAGAAGAAATTCAGCACCTCCTCTTACATGCGTATCCACATGAGGACGCACACGGGGGAGCGGCCCTTCAAGTGCTATATCTGCAACATGGGCTTCATCACCTCCAGCAAGATGCACCGCCATGTGCTGACACACCCGGAGTCGTGGGCAGATGATGAGGTCAAAGAGGAGAAAGAAGAGAAAGAGGGAGTTGATATCAAAACGGAGGAGGGAGATGAAGCAGAACAGGATGAGAGAACCAAGAGAAAGTTAAGAATGAAGAAGGCCCTGGCGAAGTTCTCCAAGAAATCGAAGACCGCGGAGAAGACCAACAGGCGTTGCAAGAAAAGACCGCATTCGTGCGAATTTTGCCAGAAGAGATTCCTGCATCTGGAGACTTTGCAGGTCCACAGGAAGTGCCACGCGGGCGAGAGCGTGGTGTACAAGTGTCACTTCTGCCTGGTGGAGCACCCCGACGCGGAGGCGCAGCGCGCGCACGAGGCCTCCCACCAGGGGCCCAAGCCCTACCTCTGCACCGTGTGCGGCCGCGGCTACAAGAAGCGGGAGACCATGATCTACCACCGCAAGAACCACAAGCCGGAGCGCGAGTTCATCTGCGACATCTGCACCAAGAGCTTCAACGCGTACTGCAAGCTGCAGCGCCACATCGTCAGCCACAGCGCGCAGCGGTTCGTGCTGCGCTACGAGTGCCCGGTGTGCGCGCACATGTTCCACACCAAGTACCATGTGCAGATGCACCTCGCCACGCACCAGAAGGAGGGCCTAATCCAAGAGGAAAACCGCAACGAGATCCTGGCGATGGTGCTGCAGAACGCGCGGAAAATACCGAAAACCGCAgacgcgcccgccgcgctcagCGACGCCGTGCCCAGCGACGAGCGAAGCCGCGTGTGCAACATATGCGGAGAGGTATTCCAACACTTCTACTACCTAGAAGAACACCTAAAGAGTCACGGCTCGAAAATCGCCATCGAAGACAGCGAAAAAGCGGAAGAGAAAAAACACATATGTACCGTCTGCAACAAAGGCTTCAAACTGCACTACTACCTGAAGCTGCACAGCTTCACGCACACTAAAGAGAAGCCTTTCATCTGCCAGCAGTGTGGCAAGGGCTTTATAACCCGCGGTAAACTGAAGAGACACGTAGAAACACATTCGGGACTCAAAAAGTACCAGTGTCACATTTGTTACAAGTTCTTCACGCGGCCGAGCTATCTGCGTATCCACGTTAGGACCATCCACGGCACTCAGGACTACAATTTTAGGGTGGATAAGGCTTGGGATCAGTATAGCGCTGATTACGCGGCGTGA
- Protein Sequence
- MNNQMASDVDPLSNYNLNNFPILDNFGNPMLPFGNQYQYTVKVEEFQNPNFYNLPQGVPPKCTQETEENTSLNPTLEDAGNETETQVTEQNQSNEDINNVNNTEEEDIKPDITDNKLLKSKKIKKERSKYFSEKIKEKDFKFYGCSVCNVNFKELHELDNHVATHKDRLTSYDWRVKNQIKKKKMKKELKKKKKLMKNVKMEPEVREFDIEIKPEDGYIGNEKASDFVNNTESDNQSSKENNGELSKNTTEASNESKRQDAPTTGASEATQQEMLNLQKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAQCGQSFITASKLGRHNKRFHLAIRYQCRICYKYFSRPVDEKPYTCAQCGQSFITASKLGRHNKRFHLAIRYQCRICYKYFSRPVDEKPYTCAQCGQSFITASKLGRHNKRFHLAIRYQCRICYKYFSRPVDEKPYTCAQCGQSFITASKLGRHNKRFHLAIRYQCRICYKYFSRFEFLTRHFDKKHPDDKLEGEPYDFNAILPYLKELEEQLREKAEKEKASSKPDDPWLDALDAEAKHEPDEVKEEAIEEKGYITVVMEPMKVDVDEVEVKVEEMGGETRGDDGDGDIRDDDDGFGGDDVKDESCGMKDEIPSDEDYFPSNTWASKPVEDPPSRSPKSNPSDRVKCPVCEKKFSTSSYMRIHMRTHTGERPFKCYICNMGFITSSKMHRHVLTHPESWADDEVKEEKEEKEGVDIKTEEGDEAEQDERTKRKLRMKKALAKFSKKSKTAEKTNRRCKKRPHSCEFCQKRFLHLETLQVHRKCHAGESVVYKCHFCLVEHPDAEAQRAHEASHQGPKPYLCTVCGRGYKKRETMIYHRKNHKPEREFICDICTKSFNAYCKLQRHIVSHSAQRFVLRYECPVCAHMFHTKYHVQMHLATHQKEGLIQEENRNEILAMVLQNARKIPKTADAPAALSDAVPSDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIEDSEKAEEKKHICTVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHVETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRVDKAWDQYSADYAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -