Oiva039597.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000026.1:17760730-17774449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.31 31 6.7 0.6 5 23 18 37 17 37 0.92 2 11 0.00036 0.036 16.0 1.6 1 23 47 69 47 69 0.98 3 11 2e-05 0.002 19.9 0.8 2 23 96 117 90 117 0.93 4 11 2.2e-06 0.00022 22.9 1.4 1 23 123 145 123 145 0.99 5 11 9.6e-06 0.00097 20.9 0.1 1 23 151 173 151 173 0.94 6 11 3.9e-06 0.0004 22.1 0.8 1 23 179 202 179 202 0.98 7 11 3.9e-06 0.0004 22.1 0.8 1 23 284 307 284 307 0.98 8 11 3.9e-06 0.0004 22.1 0.8 1 23 389 412 389 412 0.98 9 11 3.9e-06 0.0004 22.1 0.8 1 23 494 517 494 517 0.98 10 11 3.9e-06 0.0004 22.1 0.8 1 23 599 622 599 622 0.98 11 11 3.9e-06 0.0004 22.1 0.8 1 23 705 728 705 728 0.98
Sequence Information
- Coding Sequence
- atgaataatttttcaTACTCTTCCTTTGTAACCATCCACTATATTATCTGTGAGTGTGGTGATACGTTTGCAACCGAAAAATCCCTGCAGCATCATCTTGAAAATGAACACAAAACACCGAATCACGAAACCAATGAATATCAGTGCAGTACGTGTGGGAAGGTGTTCTCGACAGAGAAGGGATGTATCGTCCACCAAAAAGTCCACATGGGGGGTTTCAAAGTCAAACACGAAACCCGCAACCCCTCCAGCCCCAAGAAGAGATATTACAAGTGCAAAAATATTGTCTGTGAAGTCTGTGGGAAGAGATATGCTTCTAACGCAGCGCTGAAGTACCACCAGCGGGTCCACACGGGCGAGCGGCCCTACCGCTGCCCGCATTGCCCTAAAACATTCACCATGCCACTGTTCCTGCAGATCCACATACGCACCCACACGGGCGAGCGGCCGTACCAGTGTCCGTTGTGCCCTAAGGCCTTCAGCAATAAGGCTGCGCTGCTGAGACACGACCGAGTGCACACGGGCGTGAAACCCTACGAGTGTCCGCAATGTGGCAAGTTCTTCACGCAGTCCAACTCCATGAAGCTGCACGTGAAGACCGTCCACCTGAAGATGCCCGCGCCATACAAGAGCAAGAACCGGAAGGCCAAGATCGAGATGAGGAAGAGATGTCTGATGGCCAACATTACAGTCCAACTCCATGAAGCTGCACGTGAAGACCGTCCACCTGAAGATGCCCGCGCCATACAAGAGCAAGAACCGGAAGGCCAAGATCGAGATGAGGAAGAGATGTCTGATGGCCAACATTACAGAATCAATCCATCCAAGGTGCACACGGGTGTCAAACCCTACGAGTGTCCGCAATGTGGCAAGTTCTTCACGCAGTCCAACTCCATGAAGCTGCACGTGAAGACCGTCCACCTGAAGATGCCCGCGCCATACAAGAGCAAGAACCGGAAGGCCAAGATCGAGATGAGGAAGAGATGTCTGATGGCCAACATTACAGTCCAACTCCATGAAGCTGCACGTGAAGACCGTCCACCTGAAGATGCCCGCGCCATACAAGAGCAAGAACCGGAAGGCCAAGATCGAGATGAGGAAGAGATGTCTGATGGCCAACATTACAGAATCAATCCATCCAAGGTGCACACGGGTGTCAAACCCTACGAGTGTCCGCAATGTGGCAAGTTCTTCACGCAGTCCAACTCCATGAAGCTGCACGTGAAGACCGTCCACCTGAAGATGCCCGCGCCATACAAGAGCAAGAACCGGAAGGCCAAGATCGAGATGAGGAAGAGATGTCTGATGGCCAACATTACAGTCCAACTCCATGAAGCTGCACGTGAAGACCGTCCACCTGAAGATGCCCGCGCCATACAAGAGCAAGAACCGGAAGGCCAAGATCGAGATGAGGAAGAGATGTCTGATGGCCAACATTACAGAATCAATCCATCCAAGGTGCACACGGGTGTCAAACCCTACGAGTGTCCGCAATGTGGCAAGTTCTTCACGCAGTCCAACTCCATGAAGCTGCACGTGAAGACCGTCCACCTGAAGATGCCCGCGCCATACAAGAGCAAGAACCGGAAGGCCAAGATCGAGATGAGGAAGAGATGTCTGATGGCCAACATTACAGTCCAACTCCATGAAGCTGCACGTGAAGACCGTCCACCTGAAGATGCCCGCGCCATACAAGAGCAAGAACCGGAAGGCCAAGATCGAGATGAGGAAGAGATGTCTGATGGCCAACATTACAGAATCAATCCATCCAAGGTGCACACGGGTGTCAAACCCTACGAGTGTCCGCAATGTGGCAAGTTCTTCACGCAGTCCAACTCCATGAAGCTGCACGTGAAGACCGTCCACCTGAAGATGCCCGCGCCATACAAGAGCAAGAACCGGAAGGCCAAGATCGAGATGAGGAAGAGATGTCTGATGGCCAACATTACAGTCCAACTCCATGAAGCTGCACGTGAAGACCGTCCACCTGAAGATGCCCGCGCCATACAAGAGCAAGAACCGGAAGGCCAAGATCGAGATGAGGAAAAGGTGTCGTCTGATGGCCAACATTACAGAATCAATCCATCCAAGGTGCACACGGGTGTCAAACCCTACGAGTGTCCGCAATGTGGCAAGTTCTTCACGCAGTCCAACTCCATGAAGCTGCACGTGAAGACCGTCCACCTGAAGATGCCCGCGCCATACAAGAGCAAGAACCGGAAGGCCAAGATCGAGATGAGGAAGAGATGTCTGATGGCCAACATTACAGCTAAAGAGGTGACGCGGGTAGTCCCACAAGCGGCACCGGTGCCAATGCAGGTGACGGTCACCGCTGAGAAGGTCAGCTGCCAGCCTCAGATCAAGTTGGAGGCTGTGGAGAAGGAGCCGGCAGAAGTATTCGAGGTGGCACAATCAAACGAGGACGAGCCGTATGAGGAAGTGAAAATAGAAATCACAGAAATACCGGAAATTGTGTATGAAGAAGATTTAGAAGAATCAGAAGTTGTCTACGAAGAAGACTATAACATTGGAGAAAAGCCGCATGTCTGGGAGTCGCAAAACtga
- Protein Sequence
- MNNFSYSSFVTIHYIICECGDTFATEKSLQHHLENEHKTPNHETNEYQCSTCGKVFSTEKGCIVHQKVHMGGFKVKHETRNPSSPKKRYYKCKNIVCEVCGKRYASNAALKYHQRVHTGERPYRCPHCPKTFTMPLFLQIHIRTHTGERPYQCPLCPKAFSNKAALLRHDRVHTGVKPYECPQCGKFFTQSNSMKLHVKTVHLKMPAPYKSKNRKAKIEMRKRCLMANITVQLHEAAREDRPPEDARAIQEQEPEGQDRDEEEMSDGQHYRINPSKVHTGVKPYECPQCGKFFTQSNSMKLHVKTVHLKMPAPYKSKNRKAKIEMRKRCLMANITVQLHEAAREDRPPEDARAIQEQEPEGQDRDEEEMSDGQHYRINPSKVHTGVKPYECPQCGKFFTQSNSMKLHVKTVHLKMPAPYKSKNRKAKIEMRKRCLMANITVQLHEAAREDRPPEDARAIQEQEPEGQDRDEEEMSDGQHYRINPSKVHTGVKPYECPQCGKFFTQSNSMKLHVKTVHLKMPAPYKSKNRKAKIEMRKRCLMANITVQLHEAAREDRPPEDARAIQEQEPEGQDRDEEEMSDGQHYRINPSKVHTGVKPYECPQCGKFFTQSNSMKLHVKTVHLKMPAPYKSKNRKAKIEMRKRCLMANITVQLHEAAREDRPPEDARAIQEQEPEGQDRDEEKVSSDGQHYRINPSKVHTGVKPYECPQCGKFFTQSNSMKLHVKTVHLKMPAPYKSKNRKAKIEMRKRCLMANITAKEVTRVVPQAAPVPMQVTVTAEKVSCQPQIKLEAVEKEPAEVFEVAQSNEDEPYEEVKIEITEIPEIVYEEDLEESEVVYEEDYNIGEKPHVWESQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -