Oiva032188.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000021.1:18112190-18122892[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 36 0.011 1.1 11.2 0.1 2 23 19 41 18 41 0.97 2 36 0.06 6 9.0 3.0 1 23 63 85 63 85 0.98 3 36 2 2e+02 4.2 2.6 1 23 89 111 89 111 0.94 4 36 0.002 0.2 13.6 2.5 1 23 116 139 116 139 0.96 5 36 1.8 1.8e+02 4.3 1.5 2 23 147 169 146 169 0.90 6 36 0.00056 0.056 15.3 3.0 2 23 177 199 177 199 0.96 7 36 0.056 5.6 9.1 2.3 1 23 205 227 205 227 0.98 8 36 0.00074 0.075 15.0 0.9 1 23 233 255 233 255 0.99 9 36 0.34 34 6.6 1.3 1 23 391 414 391 414 0.95 10 36 6.1 6.2e+02 2.6 0.1 2 23 442 464 441 464 0.93 11 36 0.15 15 7.7 1.7 2 23 487 508 486 508 0.97 12 36 0.045 4.6 9.3 1.5 1 23 512 534 512 534 0.97 13 36 9.9e-05 0.01 17.7 1.0 1 23 539 562 539 562 0.97 14 36 0.95 96 5.2 2.1 2 23 570 592 569 592 0.92 15 36 0.0019 0.19 13.7 0.7 2 23 600 622 600 622 0.94 16 36 0.074 7.4 8.7 2.2 1 23 628 650 628 650 0.98 17 36 0.014 1.4 11.0 0.8 1 23 656 678 656 678 0.99 18 36 1.3 1.3e+02 4.8 2.9 1 23 818 841 818 841 0.97 19 36 0.28 28 6.9 0.1 2 23 869 891 868 891 0.95 20 36 0.016 1.6 10.8 0.3 2 23 914 935 913 935 0.97 21 36 3.9 4e+02 3.2 2.2 1 23 939 961 939 961 0.86 22 36 0.00011 0.011 17.6 0.5 1 23 966 989 966 989 0.96 23 36 0.18 19 7.4 1.5 2 23 997 1019 996 1019 0.96 24 36 0.016 1.6 10.8 4.2 2 23 1027 1049 1027 1049 0.96 25 36 0.00027 0.027 16.3 3.9 1 23 1055 1077 1055 1077 0.99 26 36 0.56 56 5.9 0.4 1 23 1083 1105 1083 1105 0.97 27 36 0.058 5.9 9.0 1.0 1 23 1245 1268 1245 1268 0.95 28 36 3.8 3.9e+02 3.3 0.0 2 23 1296 1318 1295 1318 0.93 29 36 0.14 14 7.8 0.9 2 23 1341 1362 1340 1362 0.97 30 36 0.076 7.6 8.6 3.2 1 23 1366 1388 1366 1388 0.97 31 36 8.7e-06 0.00087 21.0 2.0 1 23 1393 1416 1393 1416 0.96 32 36 0.34 34 6.6 0.6 1 23 1423 1446 1423 1446 0.87 33 36 0.00032 0.032 16.1 2.4 2 23 1454 1476 1454 1476 0.95 34 36 0.0012 0.12 14.3 0.4 1 23 1482 1504 1482 1504 0.98 35 36 0.003 0.3 13.0 0.3 1 23 1510 1532 1510 1532 0.98 36 36 0.028 2.8 10.0 0.9 1 23 1538 1561 1538 1561 0.97
Sequence Information
- Coding Sequence
- ATGAAGAAACAAACACCCCACGCATACTTACTCAAACTTGATATTACGCTATTGAAATGTAAAATATGTGACGAAAGCATTGACACATTAGAAGGATTGTTTGATCACTTACAAACTGAACACAAAAAGCTTGTCTGTACGGATATAAAGAACCAGATCTTTCCATTAAAATTTGACGGAGAAGAGCACAAATGCGTCATGTGTCCACTTGTCTTCAGCAAATTCAAAGTCCTGTTAGAACACATGCATACGCATTACAGGAATTTTGTTTGTGAGGAATGCGACTATGGATGCACTAATATGAGAAGAATGTATAACCATAAACAATTACACAAAACTGGCTCCTTTGAATGTAGCAAATGCAACAAAGTCTTCGAGACCCATCAGAGGATGAGAACGCATATGAATGCAGTCCACAAGTATAAGAACATGCCGAATAAATGCGCGGTTTGTAACGAGAGATTCAACAGCCACAAGCTGAAGGACCAGCATCTGGTCACTGTGCATGGCATGTCGCCAGTGATCCGGAAGTGCTCAGCTTGTGATAAGACCTTTACAAGCCAAAACTTGCTTCGGACCCACACGAAAAGGTTTCACCTAATGGAAAGACGGTTCAAATGCACTGAGTGCGAAATGACCTTCTTTGCCAAAAACCAGTTGCAATTCCACATGTTGAAACACACGGGCAAGAAGGATTTCCAATGTGACGTTTGCCTCAAATGGTTCACTAGGAAGTATGTTTTGAAAGAGCACATGCGTATTCATATGAACGACAGACGGTTTAAATGTGTCCGTCATCAGTTGATCATCAAAAGTGAAATAAACGACGATGCCAAGAAGAGTCATATCAAAGTCGAGAAAATAGTCAAGGCTAAGAAAAGCAAGCGTATTTCACAAAATATTAACAGAAATCTTCCTGACTCAGAAATTATAACAGCAATAGCTAAAATACCTAACGTAACAGTCAAAAGACTACCTAAAACCGTTGAGAGACCGCCTCCGATTCTGAATAAAGCCGCTATAGTTAAATTACCCAACTTAGTGAAAGGACAACCTAAACCGATAGAGGATAGCAATCCAATGATagaaaaaaacaaacattttacaAATTTTGAAGTTGTGTTGGCACATTCGAATGCAACACCGATTCGGAGCCATGACGGGTTCAACTATGCGTGTTGCTTTTGTACGGGCCAATACAGAAGCCCAGCTGATTTAAAATCGCACACGCTTATGTCACACAACAACAGCGAAGATAGACGTGAATTCATGAGAAAGAAAACTTCGGGTACTTATTTACTCAAGCTTGATATTACGCTTTTGAAATGTACCGTATGTGATGATAGCATTGACACATTACAAGGATTGTTCGACCATTTGCAAAACGAACACAAAAAGCTAATCTACACGGATGTGAAGAATCAGATCattccatttaaatttgaaaGTGAAGATCTCAAATGTGTCGTTTGCTCTCTTGTCTTCAGCAAATTCAAAGTCCTTTACGAACACATGCATACGCATTATAGAAATTTCGTATGTGTAGTTTGCGACCACGGCTGCATTAATCGGAGGGCCTTGAAATCCCATGAAGAGACCCATAAAATAGGCTCTTTCGAATGTAACAAGTGCAATAAAGTCTTCGAAACCCGTAACAGGTTGAGAACGCATGTGAATGTAGTCCACAAGTATAAGAACATGCAGAATAAATGCTCGGTTTGTAACGAGAGATTCAATAGCCATCAATCAAAAGACCAGCACTTAGTAACCGTGCATGGAATGTCGCCAGTTATTCGGAGGTGTCTAGCCTGTGACAAAACCTTTCCTACTCAATTCGCTTTACGGATTCACACTAAGAAAGATCACCTAATGGAAAGGAACTACAGATGCACTGAGTGCGAAATGAAGTTCTTTGCCAAAGAGCAGTTGAAATTCCACATGTTGAAGCATACGGGCATTAAGGATTTCCAATGTGACGTTTGCCTCAAATGGTTCACCAGAAAGAATATTTTGAAAGAGCACATGCGCATTCATATGAACGACAGACGTTTTAAATGTATCCGTCATCAGTTGATCATCAAAAGTGAAATAACCGACGACGATGCCAAGAGGAATCAAGTTAAAGTTGAGAAAATAGTCGAGTCTAAGAAAAGCAAACGTTTTTGCGAAAAGatcaataaaaattatccagCCCCAGAAATTGTAACAGCTATATCTAAAATGCCTAACATAACAGTCAAAAGACTatcaaaaaaagtaaaaaaatcagcTCCAACTCTAAATAAAACCGCTACAGTCAATTTACCTAACAGTAAATCAGTGAAATGTGTGCGTAAAACAAAAGTGGATCAACCTAGTCCTATCACcgaaaaaaacaaacattataCAAATTTTGAAGTTCTATTGGCATGTTCTAATGCAACACCAATTCGAAGCCATAACGGCTTCGCCTATACGTGCTGTTTTTGCACGGCCCAATACGGAAATACAGCTGAGCTCAAAACTCACACATCAACAACACACAACACCAGCGACGAAAGACGAGATTTCATGAAGAAACAGTGTACCCATGATTATTCACTGAAACTTGATATAACGCTCCTGAAATGTAAAGAATGCGACGAGAACATCGACACATTAGAAGGATTGCTTGACCACTTGCAAAACGAGCATAAAAAACTTATCTATACAGATGTGAAGAATCAGATTATACCGTTTAAATTTGGCGGTGAAGAACTGAAATGTGTCATTTGTTCTGTTGTCTTCAGTAAATTCAAAGTTCTTTTAGAACACATGAACACGCATTATAGAAATTATGTATGCGAGGATTGCGATTACGGATGTATAAATAGGAAGGCTATGTATTTCCACAAACAATCCCATAAGACGGGCTCCTTTGAATGTAGCATATGCAATAAGGTTTTCGAAACCCGTGAGCGTATGAGATCACATATGAAAGCAGTCCATAAGTTTGAGAATAAACCGAACAAGTGCGGAATATGTAATGAGCGCTTTAAGAGCACACAAATGAAGGACCAACATATGACAACCATGCACGGCATGTCGCCCGTAATTCGAAAATGTTCAGCCTGTGAAAAAACTTTTACTAATCACAACTCATTACGGATACACAAGCAAAAATATCATCTAATGGAAAGACGGTTCAGATGCACGGAATGTGAAATGACCTTCTTTTACAATGCACACCTAAAATACCATATGTTGACGCACACAGGCAAGAAAGATTTTCAATGTGATGTTTGCATGAAATGGTACACTTCAGATAAAGTTTTGAAAGAGCACATGCGCATTCATATGAACGACAGGAGGTATAAATGTTTCCATCATGAGTTGATCATCAAAAGTGAAATAATCGACGAAGATGACGTGAAGGATCACATTAAAGTTGAGGAAATTGTCAAATCGGAGGAAAGCAAACTTTTGTCCGAAAACAGCAATAGCGATCCTCcagccaaaaatattaaaacaactAAAGCGCAAATGCCTAACGTAACTGTCCAAAGACTATCAGAAACTGTGAAAAGACCCGCTACGATTCCAAATAAAACCACTGCACTTAAATTACCTAAGAATACTTCAGTGAAGGGTGATAGTAGAAAGATGAAGGATCAGATTAATTCAGTTACCGAAAAAAAGAAACATTATGCTAATCTTGAAGTGGTATTAGCAAATTCAACTGCAACACCAATTCGTAGCCATAACGGGTTCAGCTATGTCTGCTGCTTTTGTACGGCTCAATACAAAGATCCAGCGGAACTAAAAACTCATACATTACAGGCACACGACAGCAGCGACGAAAGACGAGCTTTCATGAAGAAACAATGTAcccattattatttactcaaACTTGACATTACGCTATTGAAATGCAGAGAATGTGACGAGGATATTGATACTATAGACGGATTGCTGGATCATTTGCAAAACGAACACAAAAAGCGTATCTATACGGACATGAAGAACCAGATTATTCCATTTAAGTTTGCGGGCGAAGAACTGAAATGCGTCATTTGTTCACTCGTCTTCATCAAATTTAAAGTCCTTTTAGAGCACATGCATACGCATTACAGAAATTACGTATGTGAAGTTTGCGACTACGGATGTATTAATCGGAGCAGGCTGTATCACCACAAAGAGTCGCATAAAACAGGCTCCTTCGATTGCAGCAGATGCGACAAAGTTTTCGAAACTCGTGATAAGTTGAGGAAGCATATGAACATGTTCCACGTATTTTTAAACATGCCTTACAAATGTGGGATCTGTAAAGAGAGATTCAAGTATGGACCAACAAAGGACACGCACATGGTAACAGTGCATGGAATGTCACCAGTGATTCGGAAGTGTTTAGCCTGCGACAAAACCTTTAACACCCAAAGTCAGTTACGGATGCACACAAAGAGGTATCACCTAATGGAAAATCGTTTCCCGTGCACGGAGTGCGACATGAATTTCTTCACTGGAGCGCAGTTGAGAAATCATTTACTGAAACACACGGGCAAGAAGGATTTCCAATGTGATGTTTGCCTGAAATGGTTCATTACGAATAAAGGGTTGAAGGAGCACATGAACATTCATGCGACAGATAGGCAGTACAATTGTTTGCAGTGTGTCCGAGGATTCAACAAGGAGTACACTTGGCGCAGCCACATGCGTAATGTACATGGAGAGGTGGAAGACTTGACCTTGTCTACGACATAA
- Protein Sequence
- MKKQTPHAYLLKLDITLLKCKICDESIDTLEGLFDHLQTEHKKLVCTDIKNQIFPLKFDGEEHKCVMCPLVFSKFKVLLEHMHTHYRNFVCEECDYGCTNMRRMYNHKQLHKTGSFECSKCNKVFETHQRMRTHMNAVHKYKNMPNKCAVCNERFNSHKLKDQHLVTVHGMSPVIRKCSACDKTFTSQNLLRTHTKRFHLMERRFKCTECEMTFFAKNQLQFHMLKHTGKKDFQCDVCLKWFTRKYVLKEHMRIHMNDRRFKCVRHQLIIKSEINDDAKKSHIKVEKIVKAKKSKRISQNINRNLPDSEIITAIAKIPNVTVKRLPKTVERPPPILNKAAIVKLPNLVKGQPKPIEDSNPMIEKNKHFTNFEVVLAHSNATPIRSHDGFNYACCFCTGQYRSPADLKSHTLMSHNNSEDRREFMRKKTSGTYLLKLDITLLKCTVCDDSIDTLQGLFDHLQNEHKKLIYTDVKNQIIPFKFESEDLKCVVCSLVFSKFKVLYEHMHTHYRNFVCVVCDHGCINRRALKSHEETHKIGSFECNKCNKVFETRNRLRTHVNVVHKYKNMQNKCSVCNERFNSHQSKDQHLVTVHGMSPVIRRCLACDKTFPTQFALRIHTKKDHLMERNYRCTECEMKFFAKEQLKFHMLKHTGIKDFQCDVCLKWFTRKNILKEHMRIHMNDRRFKCIRHQLIIKSEITDDDAKRNQVKVEKIVESKKSKRFCEKINKNYPAPEIVTAISKMPNITVKRLSKKVKKSAPTLNKTATVNLPNSKSVKCVRKTKVDQPSPITEKNKHYTNFEVLLACSNATPIRSHNGFAYTCCFCTAQYGNTAELKTHTSTTHNTSDERRDFMKKQCTHDYSLKLDITLLKCKECDENIDTLEGLLDHLQNEHKKLIYTDVKNQIIPFKFGGEELKCVICSVVFSKFKVLLEHMNTHYRNYVCEDCDYGCINRKAMYFHKQSHKTGSFECSICNKVFETRERMRSHMKAVHKFENKPNKCGICNERFKSTQMKDQHMTTMHGMSPVIRKCSACEKTFTNHNSLRIHKQKYHLMERRFRCTECEMTFFYNAHLKYHMLTHTGKKDFQCDVCMKWYTSDKVLKEHMRIHMNDRRYKCFHHELIIKSEIIDEDDVKDHIKVEEIVKSEESKLLSENSNSDPPAKNIKTTKAQMPNVTVQRLSETVKRPATIPNKTTALKLPKNTSVKGDSRKMKDQINSVTEKKKHYANLEVVLANSTATPIRSHNGFSYVCCFCTAQYKDPAELKTHTLQAHDSSDERRAFMKKQCTHYYLLKLDITLLKCRECDEDIDTIDGLLDHLQNEHKKRIYTDMKNQIIPFKFAGEELKCVICSLVFIKFKVLLEHMHTHYRNYVCEVCDYGCINRSRLYHHKESHKTGSFDCSRCDKVFETRDKLRKHMNMFHVFLNMPYKCGICKERFKYGPTKDTHMVTVHGMSPVIRKCLACDKTFNTQSQLRMHTKRYHLMENRFPCTECDMNFFTGAQLRNHLLKHTGKKDFQCDVCLKWFITNKGLKEHMNIHATDRQYNCLQCVRGFNKEYTWRSHMRNVHGEVEDLTLSTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -